Dan Yu

Publications (2)4.05 Total impact

• Article: Erratum to: A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system.

  Lina Yuan, Lufeng Ren, Yuntao Li, Weijing Han, Yong Yu, Yanan Chu, Guiming Liu, Dan Yu, Mingjing Teng, Liang Wang, Xumin Wang, Xiaoguang Zhou, Yude Yu, Jun Yu
  Science China. Life sciences 10/2011; 54(10):980. · 2.02 Impact Factor
• Article: A complete genome assembly of Glaciecola mesophila sp. nov. sequenced by using BIGIS-4 sequencer system.

  Lina Yuan, Lufeng Ren, Yuntao Li, Weijing Han, Yong Yu, Yanan Chu, Guiming Liu, Dan Yu, Mingjing Teng, Liang Wang, Xumin Wang, Xiaoguang Zhou, Yude Yu, Jun Yu
  [show abstract] [hide abstract]
  ABSTRACT: Using a pyrosequencing-based custom-made sequencer BIGIS-4, we sequenced a Gram-negative bacterium Glaciecola mesophila sp. nov. (Gmn) isolated from marine invertebrate specimens. We generated 152043 sequencing reads with a mean high-quality length of 406 bp, and assembled them using the BIGIS-4 post-processing module. No systematic low-quality data was detected beyond expected homopolymer-derived errors. The assembled Gmn genome is 5144318 bp in length and harbors 4303 annotated genes. A large number of metabolic genes correspond to various nutrients from surface marine invertebrates. Its abundant cold-tolerant and cellular signaling and related genes reveal a fundamental adaptation to low-temperature marine environment.
  Science China. Life sciences 08/2011; 54(9):835-40. · 2.02 Impact Factor