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Dae-Soo Kim, Yeseul Sin,
Dong-Wook Kim,
Jayoung Paek,
Ryong Nam Kim,
Min Young Jung,
In-Soon Park,
Aeri Kim,
Aram Kang,
Hong-Seog Park,
Sang-Haeng Choi,
Young-Hyo Chang
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ABSTRACT: The novel Sporolactobacillus vineae SL153(T) strain has excellent intestinal adherence and growth inhibitory effect on pathogenic microorganisms, including Vibrio genus microorganisms, and therefore can be effectively used for the prevention and treatment of disease caused by pathogenic microorganisms. Here, we first report the draft genome sequence of a novel species in the genus Sporolactobacillus.
Journal of bacteriology 06/2012; 194(11):3015-6. · 3.94 Impact Factor
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Dae-Soo Kim,
Jayoung Paek,
Jeong Hwan Shin,
Dong-Wook Kim,
Min Young Jung,
Ryong Nam Kim, Yeseul Sin,
Joong-Ki Kook,
Seong-Hyeuk Nam,
Aeri Kim,
Aram Kang,
Hong-Seog Park,
Sang-Haeng Choi,
Young-Hyo Chang
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ABSTRACT: A new Myroides species has been isolated from the urine of a patient with fever in spite of multiple antibiotic treatments who had undergone a radical hysterectomy for cervical cancer and percutaneous nephrostomies for hydronephrosis in the past. The isolate, Myroides injenensis M09-0166(T) (KCTC 23367(T)), showed a high level of resistance to multiple antibiotic agents. Here we provide the first report of the draft genome sequence of a novel species in the genus Myroides within the nonfermenting Gram-negative group.
Journal of bacteriology 05/2012; 194(10):2748-9. · 3.94 Impact Factor
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Dae-Soo Kim,
Min Young Jung, Yeseul Sin,
Dong-Wook Kim,
Jayoung Paek,
Ryong Nam Kim,
In-Soon Park,
Joong-Ki Kook,
Seong-Hyeuk Nam,
Aeri Kim,
Aram Kang,
Hong-Seog Park,
Sang-Haeng Choi,
Young-Hyo Chang
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ABSTRACT: A new Clostridium species has been isolated from pear orchard soil in Daejeon, Republic of Korea. The isolate, Clostridium arbusti SL206(T) (KCTC 5449(T)), showed a nitrogenase activity as well as an organic acid production. Here we first report the draft genome sequence of a novel species in the genus Clostridium within the largest Gram-positive group.
Journal of bacteriology 05/2012; 194(10):2758. · 3.94 Impact Factor
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Dae-Soo Kim,
Min Young Jung,
Aram Kang,
Jaehoon Cho, Yeseul Sin,
Jayoung Paek,
Dong-Wook Kim,
Ryong Nam Kim,
Seong-Hyeuk Nam,
Aeri Kim,
Hong-Seog Park,
Sang-Haeng Choi,
Young-Hyo Chang
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ABSTRACT: A new Peptoniphilus species has been isolated from samples from a patient who was scheduled for endoscopic sinus surgery for chronic rhinosinusitis. The isolate, Peptoniphilus rhinitidis 1-13(T) (KCTC 5985(T)), can use peptone as a sole carbon source and produce butyrate as a metabolic end product. This is the first report of the draft genome sequence of a novel species in the genus Peptoniphilus within the group of Gram-positive anaerobic cocci.
Journal of bacteriology 05/2012; 194(9):2405-6. · 3.94 Impact Factor
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Min Young Jung,
Joong-Su Kim,
Woon Kee Paek,
Igor Styrak,
In-Soon Park, Yeseul Sin,
Jayoung Paek,
Keun Ae Park,
Hongik Kim,
Hong Lim Kim,
Young-Hyo Chang
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ABSTRACT: A Gram-positive, rod-shaped, endospore-forming bacterium, designated strain BLB-1(T), was isolated from samples of tidal flat sediment from the Yellow Sea. 16S rRNA gene sequence analysis demonstrated that the isolate belonged to the Bacillus rRNA group 2 and was closely related to Bacillus massiliensis CIP 108446(T) (97.4 %), Bacillus odysseyi ATCC PTA-4993(T) (96.7 %), Lysinibacillus fusiformis DSM 2898(T) (96.2 %) and Lysinibacillus boronitolerans DSM 17140(T) (95.9 %). Sequence similarities with related species in other genera, including Caryophanon, Sporosarcina and Solibacillus, were <96.1 %. Chemotaxonomic data supported the affiliation of strain BLB-1(T) with the genus Lysinibacillus. The major menaquinone was MK-7, the cell-wall sugars were glucose and xylose, the cell-wall peptidoglycan type was A4α (l-Lys-d-Asp), the major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine and several unknown phospholipids, and the major fatty acids were anteiso-C(15 : 0) (35.6 %), iso-C(15 : 0) (25.6 %) and anteiso-C(17 : 0) (16.5 %). The most closely related species, Bacillus massiliensis and Bacillus odysseyi, were also assigned to this genus based on phylogenetic analysis and phenotypic data. The results of DNA-DNA hybridizations and phenotypic tests supported the differentiation of all three taxa from species of the genus Lysinibacillus with validly published names. Thus, strain BLB-1(T) ( = KCTC 13296(T) = JCM 15800(T)) represents a novel species, for which the name Lysinibacillus sinduriensis sp. nov. is proposed. It is also proposed that Bacillus massiliensis CIP 108446(T) ( = 4400831(T) = CCUG49529(T) = KCTC 13178(T)) and Bacillus odysseyi NBRC 100172(T) ( = 34hs-1(T) = ATCC PTA-4993(T) = NRRL B-30641(T) = DSM 18869(T) = CIP 108263(T) = KCTC 3961(T)) be transferred to the genus Lysinibacillus as Lysinibacillus massiliensis comb. nov. and Lysinibacillus odysseyi comb. nov., respectively.
INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY 11/2011; 62(Pt 10):2347-55. · 2.11 Impact Factor
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The Journal of Microbiology 02/2011; 49(1):169. · 1.10 Impact Factor
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ABSTRACT: A Gram-positive, rod-shaped, endospore-forming organism, strain BL3-6(T), was isolated from tidal flat sediments of the Yellow Sea in the region of Tae-An. A 16S rRNA gene sequence analysis demonstrated that this isolate belongs to the Bacillus cereus group, and is closely related to Bacillus mycoides (99.0% similarity), Bacillus thuringiensis (99.0%), Bacillus weihenstephanensis (99.0%), Bacillus cereus (98.9%), Bacillus anthracis (98.8%), and Bacillus pseudomycoides (98.1%). The phylogenetic distance from any validly described Bacillus species outside the Bacillus cereus group was less than 95.6%. The DNA G+C content of the strain was 39.4 mol% and the major respiratory quinone was menaquinone-7. The major cellular fatty acids were iso-C(14:0) (17.8%), iso-C(16:0) (15.8%), and iso-C(12:0) (11.3%). The diagnostic amino acid of the cell wall was meso-diaminopimelic acid and the major cell wall sugar was galactose. The results of DNA-DNA hybridization (<55.6%) and physiological and biochemical tests allowed genotypic and phenotypic differentiation of strain BL3-6(T) from the published Bacillus species. BL3-6(T) therefore represents a new species, for which the name Bacillus gaemokensis sp. nov. is proposed, with the type strain BL3-6(T) (=KCTC 13318(T) =JCM 15801(T)).
The Journal of Microbiology 12/2010; 48(6):867-71. · 1.10 Impact Factor
