Annemarie Bakai

Rheinisch-Westfälische Technische Hochschule Aachen, Aachen, North Rhine-Westphalia, Germany

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Publications (11)32.8 Total impact

  • Article: Computer-aided detection of pulmonary embolism: influence on radiologists' detection performance with respect to vessel segments.
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    ABSTRACT: The purpose was to assess the sensitivity of a CAD software prototype for the detection of pulmonary embolism in MDCT chest examinations with regard to vessel level and to assess the influence on radiologists' detection performance. Forty-three patients with suspected PE were included in this retrospective study. MDCT chest examinations with a standard PE protocol were acquired at a 16-slice MDCT. All patient data were read by three radiologists (R1, R2, R3), and all thrombi were marked. A CAD prototype software was applied to all datasets, and each finding of the software was analyzed with regard to vessel level. The standard of reference was assessed in a consensus read. Sensitivity for the radiologists and CAD software was assessed. Thirty-three patients were positive for PE, with a total of 215 thrombi. The mean overall sensitivity for the CAD software alone was 83% (specificity, 80%). Radiologist sensitivity was 77% = R3, 82% = R2, and R1 = 87%. With the aid of the CAD software, sensitivities increased to 98% (R1), 93% (R2), and 92% (R3) (p<0.0001). CAD performance at the lobar level was 87%, at the segmental 90% and at the subsegmental 77%. With the use of CAD for PE, the detection performance of radiologists can be improved.
    European Radiology 07/2008; 18(7):1350-5. · 3.22 Impact Factor
  • Article: Computer-assisted detection of pulmonary embolism: performance evaluation in consensus with experienced and inexperienced chest radiologists.
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    ABSTRACT: The value of a computer-aided detection tool (CAD) as second reader in combination with experienced and inexperienced radiologists for the diagnosis of acute pulmonary embolism (PE) was assessed prospectively. Computed tomographic angiography (CTA) scans (64 x 0.6 mm collimation; 61.4 mm/rot table feed) of 56 patients (31 women, 34-89 years, mean = 66 years) with suspected PE were analysed by two experienced (R1, R2) and two inexperienced (R3, R4) radiologists for the presence and distribution of emboli using a five-point confidence rating, and by CAD. Informed consent was obtained from all patients. Results were compared with an independent reference standard. Inter-observer agreement was calculated by kappa, confidence assessed by ROC analysis. A total of 1,116 emboli [within mediastinal (n = 72), lobar (n = 133), segmental (n = 465) and subsegmental arteries (n = 455)] were included. CAD detected 343 emboli (sensitivity = 30.74%, correct-positive rate = 6.13/patient; false-positive rate = 4.1/patient). Inter-observer agreement was good (R1, R2: kappa = 0.84, 95% CI = 0.81-0.87; R3, R4: kappa = 0.79, 95% CI = 0.76-0.81). Extended inter-observer agreement was higher in mediastinal and lobar than in segmental and subsegmental arteries (kappa = 0.84-0.86 and kappa = 0.51-0.58 for mediastinal/lobar and segmental/subsegmental arteries, respectively P < 0.05). Agreement between experienced and inexperienced readers was improved by CAD (kappa = 0.60-0.62 and kappa = 0.69-0.72 before and after CAD consensus, respectively P < 0.05). The experienced outperformed the inexperienced readers (Az = 0.95, 0.93, 0.89 and 0.86 for R1-4, respectively, P < 0.05). CAD significantly improved overall performances of readers 3 and 4 (Az = 0.86 for R3, R4 and Az = 0.89 for R3, R4 with CAD, P < 0.05), by enhancing sensitivities in segmental/subsegmental arteries. CAD improved experienced readers' sensitivities in segmental/subsegmental arteries (sens. = 0.93 and 0.90 for R1, R2 before and 0.97 and 0.94 for R1, R2 after CAD consensus, P < 0.05), without significant improvement of their overall performances (P > 0.05). Particularly inexperienced readers benefit from consensus with CAD data, greatly improving detection of segmental and subsegmental emboli. This system is advocated as a second reader.
    European Radiology 03/2008; 18(2):298-307. · 3.22 Impact Factor
  • Source
    Conference Proceeding: Locally adaptive fuzzy pulmonary vessel segmentation in contrast enhanced CT data.
    Jens N. Kaftan, Annemarie Bakai, Marco Das, Til Aach
    Proceedings of the 2008 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, Paris, France, May 14-17, 2008; 01/2008
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    Article: Accuracy of automated volumetry of pulmonary nodules across different multislice CT scanners.
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    ABSTRACT: The purpose of this study was to compare the accuracy of an automated volumetry software for phantom pulmonary nodules across various 16-slice multislice spiral CT (MSCT) scanners from different vendors. A lung phantom containing five different nodule categories (intraparenchymal, around a vessel, vessel attached, pleural, and attached to the pleura), with each category comprised of 7-9 nodules (total, n = 40) of varying sizes (diameter 3-10 mm; volume 6.62 mm(3)-525 mm(3)), was scanned with four different 16-slice MSCT scanners (Siemens, GE, Philips, Toshiba). Routine and low-dose chest protocols with thin and thick collimations were applied. The data from all scanners were used for further analysis using a dedicated prototype volumetry software. Absolute percentage volume errors (APE) were calculated and compared. The mean APE for all nodules was 8.4% (+/-7.7%) for data acquired with the 16-slice Siemens scanner, 14.3% (+/-11.1%) for the GE scanner, 9.7% (+/-9.6%) for the Philips scanner and 7.5% (+/-7.2%) for the Toshiba scanner, respectively. The lowest APEs were found within the diameter size range of 5-10 mm and volumes >66 mm(3). Nodule volumetry is accurate with a reasonable volume error in data from different scanner vendors. This may have an important impact for intraindividual follow-up studies.
    European Radiology 09/2007; 17(8):1979-84. · 3.22 Impact Factor
  • Article: Automated volumetry of solid pulmonary nodules in a phantom: accuracy across different CT scanner technologies.
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    ABSTRACT: The accuracy of automated volumetry for pulmonary nodules in a phantom using different CT scanner technologies from single-slice spiral CT (SSCT) to 64-slice multidetector-row CT (MDCT) was compared. A lung phantom with 5 different categories of pulmonary nodules was scanned using a single-slice spiral CT, a 4-slice MDCT, a 16-slice MDCT and a 64-slice MDCT. Each category comprised of 7-9 nodules each (total n = 40) with different known volumes. Standard dose and low dose protocols were performed using thin and thick collimation. Image data were reconstructed at the thinnest slice thickness. Data sets were analyzed with a dedicated volumetry software. Volumes of all nodules were calculated and compared. Mean absolute percentage error (APE) for all nodules was 8.65% (+/-7.29%) for the SSCT, 10.26% (+/-8.25%) for the 4-slice MDCT, 8.19% (+/-7.57%) for the 16-slice MDCT and 7.89% (+/-7.39%) for the 64-slice MDCT. There was statistically significant influence of the scanner type, protocol, anatomic location, and nodule volume on APE, but overall, APEs were comparable. Computer-aided volumetry showed accurate measurements in all tested scanner types. This finding has important implications for nodule assessment and follow-up.
    Investigative Radiology 06/2007; 42(5):297-302. · 4.59 Impact Factor
  • Article: Morphological segmentation and partial volume analysis for volumetry of solid pulmonary lesions in thoracic CT scans.
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    ABSTRACT: Volumetric growth assessment of pulmonary lesions is crucial to both lung cancer screening and oncological therapy monitoring. While several methods for small pulmonary nodules have previously been presented, the segmentation of larger tumors that appear frequently in oncological patients and are more likely to be complexly interconnected with lung morphology has not yet received much attention. We present a fast, automated segmentation method that is based on morphological processing and is suitable for both small and large lesions. In addition, the proposed approach addresses clinical challenges to volume assessment such as variations in imaging protocol or inspiration state by introducing a method of segmentation-based partial volume analysis (SPVA) that follows on the segmentation procedure. Accuracy and reproducibility studies were performed to evaluate the new algorithms. In vivo interobserver and interscan studies on low-dose data from eight clinical metastasis patients revealed that clinically significant volume change can be detected reliably and with negligible computation time by the presented methods. In addition, phantom studies were conducted. Based on the segmentation performed with the proposed method, the performance of the SPVA volumetry method was compared with the conventional technique on a phantom that was scanned with different dosages and reconstructed with varying parameters. Both systematic and absolute errors were shown to be reduced substantially by the SPVA method. The method was especially successful in accounting for slice thickness and reconstruction kernel variations, where the median error was more than halved in comparison to the conventional approach.
    IEEE Transactions on Medical Imaging 05/2006; 25(4):417-34. · 3.64 Impact Factor
  • Article: Study on the tongue and groove effect of the Elekta multileaf collimator using Monte Carlo simulation and film dosimetry.
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    ABSTRACT: Nowadays, multileaf collimation of the treatment fields from medical linear accelerators is a common option. Due to the design of the leaf sides, the tongue and groove effect occurs for certain multileaf collimator applications such as the abutment of fields where the beam edges are defined by the sides of the leaves. In this study, the tongue and groove effect was measured for two pairs of irregular multileaf collimator fields that were matched along leaf sides in two steps. Measurements were made at 10 cm depth in a polystyrene phantom using Kodak EDR2 films for a photon beam energy of 6 MV on an Elekta Sli-plus accelerator. To verify the measurements, full Monte Carlo simulations were done. In the simulations, the design of the leaf sides was taken into account and one component module of BEAM code was modified to correctly simulate the Elekta multileaf collimator. The results of measurements and simulations are in good agreement and within the tolerance of film dosimetry.
    Strahlentherapie und Onkologie 02/2004; 180(1):57-61. · 3.56 Impact Factor
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    Article: A revision of the gamma-evaluation concept for the comparison of dose distributions.
    Annemarie Bakai, Markus Alber, Fridtjof Nüsslin
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    ABSTRACT: A method for the quantitative four-dimensional (4D) evaluation of discrete dose data based on gradient-dependent local acceptance thresholds is presented. The method takes into account the local dose gradients of a reference distribution for critical appraisal of misalignment and collimation errors. These contribute to the maximum tolerable dose error at each evaluation point to which the local dose differences between comparison and reference data are compared. As shown, the presented concept is analogous to the gamma-concept of Low et al (1998a Med. Phys. 25 656-61) if extended to (3+1) dimensions. The pointwise dose comparisons of the reformulated concept are easier to perform and speed up the evaluation process considerably, especially for fine-grid evaluations of 3D dose distributions. The occurrences of false negative indications due to the discrete nature of the data are reduced with the method. The presented method was applied to film-measured, clinical data and compared with gamma-evaluations. 4D and 3D evaluations were performed. Comparisons prove that 4D evaluations have to be given priority, especially if complex treatment situations are verified, e.g., non-coplanar beam configurations.
    Physics in Medicine and Biology 12/2003; 48(21):3543-53. · 2.83 Impact Factor
  • Article: [Positioning accuracy in conformational prostatic irradiation using portal imaging].
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    ABSTRACT: Conformal radiotherapy techniques as used in prostate treatment allow to spare normal tissue by conforming the radiation fields to the shape of the planning target volume (PTV). To be able to fully utilize the advantages of these techniques correct patient positioning is an important prerequisite. This study employing an electronic portal imaging device (EPID) investigated the positioning uncertainties that occur in the pelvic region for different patient positioning devices. 15 patients with prostate cancer were irradiated with or without rectal balloon/pelvic mask at a linear accelerator with multileaf collimator (MLC). For each patient multiple portal images were taken from different directions and compared to the digitally reconstructed radiographs (DRRs) of the treatment planning system and to simulation films (Table 1, Figure 1). In spite of different positioning devices, all patients showed comparable total positioning uncertainties of 4.0 mm (lateral), 4.5 mm (cranio-caudal) and 1.7 mm (dorso-ventral). The lateral positioning error was reduced for the pelvic mask patients while the cranio-caudal error increased (Table 2, Figure 2). A systematic and a random component sum up to the total positioning error, and a good estimate of the magnitudes of the two is possible from six to eight portal images (Figure 3). With a small number of portal images it is possible to find out the systematic and random positioning error of a patient. Knowledge of the random error can be used to resize the treatment margin which is clinically relevant since this error differs greatly for different patients (Figure 4). Image analysis with EPID is convenient, yet has some problems. For example, one only gets indirect information on the movement of the ventral rectum wall (Figure 5). The successful operation of positioning devices, although, needs further improvement--especially if one focuses on IMRT.
    Strahlentherapie und Onkologie 03/2002; 178(2):84-90. · 3.56 Impact Factor
  • Article: Untersuchungen zur Positionierungsgenauigkeit bei Prostatakonformationsbestrahlungen mittels Portal-Imaging
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    ABSTRACT: Hintergrund: Konformationstechniken, wie sie heutzutage routinemig fr Patienten mit Prostatakarzinom angewandt werden, erlauben, durch Adaption der Bestrahlungsfelder an das Planungszielvolumen (PTV) umliegendes Normalgewebe zu schonen. Um die Vorteile dieser Techniken jedoch vollstndig nutzen zu knnen, ist die korrekte Patientenpositionierung eine wichtige Voraussetzung. In dieser Studie wurde mittels Portal-Imaging (EPID) untersucht, welche Positionierungsgenauigkeiten im Beckenbereich unter Verwendung unterschiedlicher Lagerungshilfen mglich sind. Patienten und Methode: Fr die Studie wurden 15 Patienten mit Prostatakarzinom auswhlen, die teils mit, teils ohne Rektumballon bzw. Beckenmaske an einem Linearbeschleuniger mit Viellamellenblenden (MLC) bestrahlt wurden. Von jedem Patienten wurden mehrfach aus orthogonalen Richtungen mittels eines Portal-Imaging-Systems Aufnahmen angefertit und anschlieend mit den Planungs-DRRs (Digitally Reconstructed Radiographs) sowie den Simulationsaufnahmen verglichen. Ergebnisse: Trotz unterschiedlicher Lagerungshilfen konnten fr smtliche Patientengruppen Gesamtpositionierungsungenauigkeiten von durchschnittlich 4,0 mm (lateral), 4,5 mm (kraniokaudal) sowie 17 mm (dorsoventral) festgestellt werden. Mit Beckenmaske war der laterale Positionierungsfehler zwar reduziert, gleichzeitig jedoch der kraniokaudale Positionierungsfehler verstrkt. Der Gesamtpositionierungsfehler teilte sich dabei in einen systematischen und einen statistischen Anteil auf, fr deren verlssliche Abschtzung sechs bis acht EPID-Aufnahmen erforderlich waren. Schlussfolgerungen: Mittels Portal-Imaging ist es mglich, aus einer geringen Anzahl von Verifikationsaufnahmen fr jeden Patienten den systematischen und statistischen Positionierungsfehler zu ermitteln. Der erfolgreiche Einsatz von Lagerungshilfen zur Patientenpositionierung erfordert jedoch - insbesondere im Hinblick auf IMRT - eine weitere Optimierung. Background: Conformal radiotherapy techniques as used in prostate treatment allow to spare normal tissue by conforming the radiation fields to the shape of the planning target volume (PTV). To be able to fully utilize the advantages of these techniques correct patient positioning is an important prerequisite. This study employing an electronic portal imaging device (EPID) investigated the positioning uncertainties that occur in the pelvic region for different patient positioning devices. Patients and Methods: 15 patients with prostate cancer were irradiated with or without rectal balloon /pelvic mask at a linear accelerator with multileaf collimator (MLC). For each patient multiple portal images were taken from different directions and compared to the digitally reconstructed radiographs (DRRs) of the treatment planning system and to simulation films (Table 1, Figure 1). Results: In spite of different positioning devices, all patients showed comparable total positioning uncertainties of 4.0 mm (lateral), 4.5 mm (cranio-caudal) and 1.7 mm (dorso-ventral). The lateral positioning error was reduced for the pelvic mask patients while the cranio-caudal error increased (Table 2, Figure 2). A systematic and a random component sum up to the total positioning error, and a good estimate of the magnitudes of the two is possible from six to eight portal images (Figure 3). Conclusions: With a small number of portal images it is possible to find out the systematic and random positioning error of a patient. Knowledge of the random error can be used to resize the treatment margin which is clinically relevant since this error differs greatly for different patients (Figure 4). Image analysis with EPID is convenient, yet has some problems. For example, one only gets indirect information on the movement of the ventral rectum wall (Figure 5). The successful operation of positioning devices, although, needs further improvement - especially if one focuses on IMRT.
    Strahlentherapie und Onkologie 01/2002; 178(2):84-90. · 3.56 Impact Factor
  • Article: Computer-aided measurements of pulmonary emphysema in chest multidetector-row spiral computed tomography: effect of image reconstruction parameters.
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    ABSTRACT: To evaluate the effect of different image reconstruction parameters on quantitative automated measurements of pulmonary emphysema in chest multidetector-row spiral computed tomography. Thirty patients with known emphysema underwent multidetector-row spiral computed tomography. Retrospective reconstruction with a soft tissue kernel (Siemens B20 at 1-mm, 2-mm, and 3-mm slices) and 4 alternative kernel grades (from smooth to sharp: Siemens B30, B40, B50, B60 at 1-mm slices) was performed. Total lung volume, emphysema volume (EV), 15th percentile density, and 4 EV clusters were quantified. Results were compared with those of standard algorithm B20/1-mm slices. Differences in total lung volume were less than 0.2%. Alternative kernel grades resulted in a significantly increased average EV. The 15th percentile density showed a significant average difference for all alternative algorithms. The large emphysema cluster showed a significant change for reconstruction algorithms B50, B60, B20/2 mm and B20/3 mm. Pulmonary EV is significantly affected by different reconstruction algorithms.
    Journal of computer assisted tomography 32(6):899-904. · 1.38 Impact Factor