Ilkka Lappalainen

Publications (2)43.56 Total impact

• Article: dbVar and DGVa: public archives for genomic structural variation.

  Ilkka Lappalainen, John Lopez, Lisa Skipper, Timothy Hefferon, J Dylan Spalding, John Garner, Chao Chen, Michael Maguire, Matt Corbett, George Zhou, Justin Paschall, Victor Ananiev, Paul Flicek, Deanna M Church
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  ABSTRACT: Much has changed in the last two years at DGVa (http://www.ebi.ac.uk/dgva) and dbVar (http://www.ncbi.nlm.nih.gov/dbvar). We are now processing direct submissions rather than only curating data from the literature and our joint study catalog includes data from over 100 studies in 11 organisms. Studies from human dominate with data from control and case populations, tumor samples as well as three large curated studies derived from multiple sources. During the processing of these data, we have made improvements to our data model, submission process and data representation. Additionally, we have made significant improvements in providing access to these data via web and FTP interfaces.
  Nucleic Acids Research 11/2012; · 8.03 Impact Factor
• Article: Public data archives for genomic structural variation.

  Deanna M Church, Ilkka Lappalainen, Tam P Sneddon, Jonathan Hinton, Michael Maguire, John Lopez, John Garner, Justin Paschall, Michael DiCuccio, Eugene Yaschenko, Stephen W Scherer, Lars Feuk, Paul Flicek
  Nature Genetics 10/2010; 42(10):813-4. · 35.53 Impact Factor