Jeffery G Derge

Publications (2)23.29 Total impact

• Source

  Available from: ncbi.nlm.nih.gov

  Article: The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC).

  Daniela S Gerhard, Lukas Wagner, Elise A Feingold, Carolyn M Shenmen, Lynette H Grouse, Greg Schuler, Steven L Klein, Susan Old, Rebekah Rasooly, Peter Good, [......], Angelique Schnerch, Jacqueline E Schein, Steven J M Jones, Robert A Holt, Agnes Baross, Marco A Marra, Sandra Clifton, Kathryn A Makowski, Stephanie Bosak, Joel Malek
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  ABSTRACT: The National Institutes of Health's Mammalian Gene Collection (MGC) project was designed to generate and sequence a publicly accessible cDNA resource containing a complete open reading frame (ORF) for every human and mouse gene. The project initially used a random strategy to select clones from a large number of cDNA libraries from diverse tissues. Candidate clones were chosen based on 5'-EST sequences, and then fully sequenced to high accuracy and analyzed by algorithms developed for this project. Currently, more than 11,000 human and 10,000 mouse genes are represented in MGC by at least one clone with a full ORF. The random selection approach is now reaching a saturation point, and a transition to protocols targeted at the missing transcripts is now required to complete the mouse and human collections. Comparison of the sequence of the MGC clones to reference genome sequences reveals that most cDNA clones are of very high sequence quality, although it is likely that some cDNAs may carry missense variants as a consequence of experimental artifact, such as PCR, cloning, or reverse transcriptase errors. Recently, a rat cDNA component was added to the project, and ongoing frog (Xenopus) and zebrafish (Danio) cDNA projects were expanded to take advantage of the high-throughput MGC pipeline.
  Genome Research 11/2004; 14(10B):2121-7. · 13.61 Impact Factor
• Source

  Available from: Luda Diatchenko

  Article: Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.

  Robert L Strausberg, Elise A Feingold, Lynette H Grouse, Jeffery G Derge, Richard D Klausner, Francis S Collins, Lukas Wagner, Carolyn M Shenmen, Gregory D Schuler, Stephen F Altschul, [......], Jeremy Schmutz, Richard M Myers, Yaron S N Butterfield, Martin I Krzywinski, Ursula Skalska, Duane E Smailus, Angelique Schnerch, Jacqueline E Schein, Steven J M Jones, Marco A Marra
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  ABSTRACT: The National Institutes of Health Mammalian Gene Collection (MGC) Program is a multiinstitutional effort to identify and sequence a cDNA clone containing a complete ORF for each human and mouse gene. ESTs were generated from libraries enriched for full-length cDNAs and analyzed to identify candidate full-ORF clones, which then were sequenced to high accuracy. The MGC has currently sequenced and verified the full ORF for a nonredundant set of >9,000 human and >6,000 mouse genes. Candidate full-ORF clones for an additional 7,800 human and 3,500 mouse genes also have been identified. All MGC sequences and clones are available without restriction through public databases and clone distribution networks (see http:mgc.nci.nih.gov).
  Proceedings of the National Academy of Sciences 12/2002; 99(26):16899-903. · 9.68 Impact Factor