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Victor M Markowitz,
I-Min A Chen,
Krishna Palaniappan,
Ken Chu,
Ernest Szeto,
Yuri Grechkin, Anna Ratner,
Biju Jacob,
Jinghua Huang,
Peter Williams,
Marcel Huntemann,
Iain Anderson,
Konstantinos Mavromatis,
Natalia N Ivanova,
Nikos C Kyrpides
[show abstract]
[hide abstract]
ABSTRACT: The Integrated Microbial Genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG integrates publicly available draft and complete genomes from all three domains of life with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. IMG's data content and analytical capabilities have been continuously extended through regular updates since its first release in March 2005. IMG is available at http://img.jgi.doe.gov. Companion IMG systems provide support for expert review of genome annotations (IMG/ER: http://img.jgi.doe.gov/er), teaching courses and training in microbial genome analysis (IMG/EDU: http://img.jgi.doe.gov/edu) and analysis of genomes related to the Human Microbiome Project (IMG/HMP: http://www.hmpdacc-resources.org/img_hmp).
Nucleic Acids Research 01/2012; 40(Database issue):D115-22. · 8.03 Impact Factor
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Victor M Markowitz,
I-Min A Chen,
Ken Chu,
Ernest Szeto,
Krishna Palaniappan,
Biju Jacob, Anna Ratner,
Konstantinos Liolios,
Ioanna Pagani,
Marcel Huntemann,
Konstantinos Mavromatis,
Natalia N Ivanova,
Nikos C Kyrpides
[show abstract]
[hide abstract]
ABSTRACT: The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number of plasmids and viruses. IMG/M currently contains thousands of genomes and metagenome samples with billions of genes. IMG/M-HMP is an IMG/M data mart serving the US National Institutes of Health (NIH) Human Microbiome Project (HMP), focussed on HMP generated metagenome datasets, and is one of the central resources provided from the HMP Data Analysis and Coordination Center (DACC). IMG/M-HMP is available at http://www.hmpdacc-resources.org/imgm_hmp/.
PLoS ONE 01/2012; 7(7):e40151. · 4.09 Impact Factor
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Victor M Markowitz,
I-Min A Chen,
Ken Chu,
Ernest Szeto,
Krishna Palaniappan,
Yuri Grechkin, Anna Ratner,
Biju Jacob,
Amrita Pati,
Marcel Huntemann,
Konstantinos Liolios,
Ioanna Pagani,
Iain Anderson,
Konstantinos Mavromatis,
Natalia N Ivanova,
Nikos C Kyrpides
[show abstract]
[hide abstract]
ABSTRACT: The integrated microbial genomes and metagenomes (IMG/M) system provides support for comparative analysis of microbial community aggregate genomes (metagenomes) in a comprehensive integrated context. IMG/M integrates metagenome data sets with isolate microbial genomes from the IMG system. IMG/M's data content and analytical capabilities have been extended through regular updates since its first release in 2007. IMG/M is available at http://img.jgi.doe.gov/m. A companion IMG/M systems provide support for annotation and expert review of unpublished metagenomic data sets (IMG/M ER: http://img.jgi.doe.gov/mer).
Nucleic Acids Research 11/2011; 40(Database issue):D123-9. · 8.03 Impact Factor
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Victor M. Markowitz,
I-Min A. Chen,
Krishna Palaniappan,
Ken Chu,
Ernest Szeto,
Yuri Grechkin, Anna Ratner,
Iain Anderson,
Athanasios Lykidis,
Konstantinos Mavrommatis,
Natalia Ivanova,
Nikos Kyrpides
Nucleic Acids Research. 01/2010; 38:382-390.
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Victor M Markowitz,
I-Min A Chen,
Krishna Palaniappan,
Ken Chu,
Ernest Szeto,
Yuri Grechkin, Anna Ratner,
Iain Anderson,
Athanasios Lykidis,
Konstantinos Mavromatis,
Natalia N Ivanova,
Nikos C Kyrpides
[show abstract]
[hide abstract]
ABSTRACT: The integrated microbial genomes (IMG) system serves as a community resource for comparative analysis of publicly available genomes in a comprehensive integrated context. IMG contains both draft and complete microbial genomes integrated with other publicly available genomes from all three domains of life, together with a large number of plasmids and viruses. IMG provides tools and viewers for analyzing and reviewing the annotations of genes and genomes in a comparative context. Since its first release in 2005, IMG's data content and analytical capabilities have been constantly expanded through regular releases. Several companion IMG systems have been set up in order to serve domain specific needs, such as expert review of genome annotations. IMG is available at http://img.jgi.doe.gov.
Nucleic Acids Research 10/2009; 38(Database issue):D382-90. · 8.03 Impact Factor
