Tamás Hegedűs

Publications (3)5.77 Total impact

• Article: Search for proteins with similarity to the CFTR R domain using an optimized RDBMS solution, mBioSQL

  Tamás Hegedűs, John R. Riordan
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  ABSTRACT: The cystic fibrosis transmembrane conductance regulator (CFTR) comprises ATP binding and transmembrane domains, and a unique regulatory (R) domain not found in other ATP binding cassette proteins. Phosphorylation of the R domain at different sites by PKA and PKC is obligatory for the chloride channel function of CFTR. Sequence similarity searches on the R domain were uninformative. Furthermore, R domains from different species show low sequence similarity. Since these R domains resemble each other only in the location of the phosphorylation sites, we generated different R domain patterns masking amino acids between these sites. Because of the high number of the generated patterns we expected a large number of matches from the UniProt database. Therefore, a relational database management system (RDBMS) was set up to handle the results. During the software development our system grew into a general package which we term Modular BioSQL (mBioSQL). It has higher performance than other solutions and presents a generalized method for the storage of biological result-sets in RDBMS allowing convenient further analysis. Application of this approach revealed that the R domain phosphorylation pattern is most similar to those in nuclear proteins, including transcription and splicing factors.
  Central European Journal of Biology 02/2006; 1(1):29-42. · 1.00 Impact Factor
• Article: Nucleotide Occlusion in the Human Cystic Fibrosis Transmembrane Conductance Regulator

  Katalin Szabó, Gergely Szakács, Tamás Hegedűs, Balázs Sarkadi
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  ABSTRACT: The function of the human cystic fibrosis transmembrane conductance regulator (CFTR) protein as a chloride channel or transport regulator involves cellular ATP binding and cleavage. Here we describe that human CFTR expressed in insect (Sf9) cell membranes shows specific, Mg2+-dependent nucleotide occlusion, detected by covalent labeling with 8-azido-[α-32P]ATP. Nucleotide occlusion in CFTR requires incubation at 37 °C, and the occluded nucleotide can not be removed by repeated washings of the membranes with cold MgATP-containing medium. By using limited tryptic digestion of the labeled CFTR protein we found that the adenine nucleotide occlusion preferentially occurred in the N-terminal nucleotide binding domain (NBD). Addition of the ATPase inhibitor vanadate, which stabilizes an open state of the CFTR chloride channel, produced an increased nucleotide occlusion and resulted in the labeling of both the N-terminal and C-terminal NBDs. Protein modification withN-ethylmaleimide prevented both vanadate-dependent and -independent nucleotide occlusion in CFTR. The pattern of nucleotide occlusion indicates significant differences in the ATP hydrolyzing activities of the two NBDs, which may explain their different roles in the CFTR channel regulation.
  Journal of Biological Chemistry 04/1999; 274(18):12209-12212. · 4.77 Impact Factor
• Article: Az ABCA1 membránfehérje funkciójának és fehérje-kölcsönhatásainak vizsgálata = Investigation of the function and protein interactions of the ABCA1 membrane protein

  Katalin Szabó, Tamás Hegedűs, Csilla Laczka, Gergely Szakács
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  ABSTRACT: A kutatás célja az ABCA1 membránfehérje működésének és fehérje-kölcsönhatásainak jellemzése volt. Új modellrendszereket alakítottunk ki Sf9 rovarsejt-bakulovírus és retrovirális expressziós rendszerek segítségével, részletesen vizsgáltuk a vad-típusú és mutáns ABCA1 fehérjék sejten belüli lokalizációját, működését és PDZ fehérjékkel való kölcsönhatását. Bizonyítottuk, hogy az ABCA1 fehérje mind az ApoA1-függő koleszterin kiáramlás, mind a Ca2+-aktivált sejtfelszíni foszfatidilszerin expozíció folyamatában fontos szerepet játszik. Elsőként mutattunk ki összefüggést egy vérzékenységi betegség és az ABCA1 működése között. Elemeztük az ABCA1 mutációnak hatását a betegségre jellemző hibás foszfatidilszerin expozícióban. Vizsgáltuk a lipidanyagcserére ható vegyületek hatását az ABCA1-hez köthető funkciókra, azonosítottunk két új gátló vegyületet. Megállapítottuk, hogy egy speciális PDZ fehérje a vizsgált ABC fehérjék közül egyedül az ABCA1 fehérjével lép kölcsönhatásba, más ABC transzporterekhez kötő egyéb PDZ fehérjék nem kötődtek az ABCA1-hez. Kimutattuk polarizált sejtekben az ABCA1, a b2-syntrophin és az utrophin bazolaterális ko-lokalizációját. A kidolgozott mérési módszereket más ABC transzporterek működésének vizsgálatára is eredményesen alkalmaztuk. Megkezdtük a foszfolipid-transzportért felelős ABC fehérjék azonosítását trombocitákban. | The aims of this project were the functional characterization of the ABCA1 protein and identification of its potential interactions with intracellular proteins. We installed new assay systems to analyse the function, subcellular localization and protein interactions of the wild-type and mutant ABCA1 versions, by using two expression systems: the baculovirus-Sf9 insect cell system and retrovirus based expression system for mammalian cells. We proved that ABCA1 plays a key role both in cellular ApoAI-mediated cholesterol removal pathway, and in the exofacial translocation of phosphatidylserine. Our results provided the first link between a defect in a transbilayer phospholipid transport pathway, that of ABCA1, and the bleeding phenotype. We analysed the effects of various mutations of ABCA1 on the Ca2+-stimulated PS exposition. We screened the influence of potential inhibitors on the ABCA1-dependent processes and identified new inhibitors of the PS exposition. We demonstrated that among the examined ABC transporters only ABCA1 binds b2-syntrophin. A diverse group of PDZ proteins that interacts with other ABC proteins does not bind to ABCA1. We showed basolateral colocalization of ABCA1 protein with b2-syntrophin and utrophin. The assays for ABCA1 characterization were applied for studying other ABC proteins successfully. We started the identification of ABC proteins involved in phospholipid translocation in platelets.