Ryo Matsuda

Publications (8)35.75 Total impact

• Article: The actin family member Arp6 and the histone variant H2A.Z are required for spatial positioning of chromatin in chicken cell nuclei.

  Eri Ohfuchi Maruyama, Tetsuya Hori, Hideyuki Tanabe, Hiroshi Kitamura, Ryo Matsuda, Shigenobu Tone, Pavel Hozak, Felix A Habermann, Johann von Hase, Christoph Cremer, Tatsuo Fukagawa, Masahiko Harata
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  ABSTRACT: The spatial organization of chromatin in the nucleus contributes to genome function and is altered during the differentiation of normal and tumorigenic cells. Although nuclear actin-related proteins (Arps) have roles in the local alteration of chromatin structure, it is unclear whether they are involved in the spatial positioning of chromatin. In the interphase nucleus of vertebrate cells, gene-dense and gene-poor chromosome territories (CTs) are located in the center and periphery, respectively. We analyzed chicken DT40 cells in which Arp6 had been knocked out conditionally, and showed that the radial distribution of CTs was impaired in these knockout cells. Arp6 is an essential component of the SRCAP chromatin remodeling complex, which deposits the histone variant H2A.Z into chromatin. The redistribution of CTs was also observed in H2A.Z-deficient cells for gene-rich microchromosomes, but to lesser extent for gene-poor macrochromosomes. These results indicate that Arp6 and H2A.Z contribute to the radial distribution of CTs through different mechanisms. Microarray analysis suggested that the localization of chromatin to the nuclear periphery per se is insufficient for the repression of most genes.
  Journal of Cell Science 05/2012; 125(Pt 16):3739-43. · 6.11 Impact Factor
• Source

  Available from: PubMed Central

  Article: Identification and characterization of the two isoforms of the vertebrate H2A.Z histone variant.

  Ryo Matsuda, Tetsuya Hori, Hiroshi Kitamura, Kozo Takeuchi, Tatsuo Fukagawa, Masahiko Harata
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  ABSTRACT: Histone variants play important roles in the epigenetic regulation of genome function. The histone variant H2A.Z is evolutionarily conserved from yeast to vertebrates, and it has been reported to have multiple effects upon gene expression and insulation, and chromosome segregation. Recently two genes encoding H2A.Z were identified in the vertebrate genome. However, it is not yet clear whether the proteins transcribed from these genes are functionally distinct. To address this issue, we knocked out each gene individually in chicken DT40 cells. We found that two distinct proteins, H2A.Z-1 and H2A.Z-2, were produced from these genes, and that these proteins could be separated on a long SDS-PAGE gel. The two isoforms were deposited to a similar extent by the SRCAP chromatin-remodeling complex, suggesting redundancy to their function. However, cells lacking either one of the two isoforms exhibited distinct alterations in cell growth and gene expression, suggesting that the two isoforms have differential effects upon nucleosome stability and chromatin structure. These findings provide insight into the molecular basis of the multiple functions of the H2A.Z gene products.
  Nucleic Acids Research 03/2010; 38(13):4263-73. · 8.03 Impact Factor
• Article: The human actin-related protein hArp5: nucleo-cytoplasmic shuttling and involvement in DNA repair.

  Kumiko Kitayama, Mariko Kamo, Yukako Oma, Ryo Matsuda, Takafumi Uchida, Tsuyoshi Ikura, Satoshi Tashiro, Takashi Ohyama, Barbara Winsor, Masahiko Harata
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  ABSTRACT: Certain actin-related proteins (Arps) of budding yeast are localized in the nucleus, and have essential roles as stoichiometric components of histone acetyltransferase (HAT) and chromatin remodeling complexes. On the other hand, identification of vertebrate nuclear Arps and their functional analyses are just beginning. We show that human Arp5 (hArp5) proteins are localized in the nucleus, and that arp5Delta yeast cells are partially complemented by hArp5. Thus, hArp5 is a novel member of the nuclear Arps of vertebrates, which possess evolutionarily conserved functions from yeast to humans. We show here that hArp5 shuttles between the nucleus and the cytoplasm. Furthermore, after the induction of DNA double strand breaks (DSB), cell growth and the accumulation of phosphorylated histone H2AX (gamma-H2AX) are impaired by hArp5 depletion. Association of hArp5 with the hIno80 chromatin remodeling enzyme and decrease of chromatin-bound hIno80 by hArp5-depletion indicate that hArp5 may have a role in the recruitment of the hINO80 complex to chromatin. Overexpression of hArp5 and hIno80 enhanced gamma-H2AX accumulation. These observations suggest that hArp5 is involved in the process of DSB repair through the regulation of the chromatin remodelling machinery.
  Experimental Cell Research 12/2008; 315(2):206-17. · 3.58 Impact Factor
• Article: Effects of blue light deficiency on acclimation of light energy partitioning in PSII and CO2 assimilation capacity to high irradiance in spinach leaves.

  Ryo Matsuda, Keiko Ohashi-Kaneko, Kazuhiro Fujiwara, Kenji Kurata
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  ABSTRACT: Blue light effects on the acclimation of energy partitioning characteristics in PSII and CO2 assimilation capacity in spinach to high growth irradiance were investigated. Plants were grown hydroponically in different light treatments that were a combination of two light qualities and two irradiances,i.e. white light and blue-deficient light at photosynthetic photon flux densities (PPFDs) of 100 and 500 micromol m(-2) s(-1). The CO2 assimilation rate, the quantum efficiency of PSII(PhiPSII) and thermal dissipation activity (F(v)/F(m)-F'(v)/F'(m)) in young, fully expanded leaves were measured under 1,600 micromol m(-2) s(-1) white light. The CO2 assimilation rate and (PhiPSII) were higher, while F(v)/F(m)-F'(v)/F'(m) was lower in plants grown under high irradiance than in plants grown under low irradiance. These responses were observed irrespective of the presence or absence of blue light during growth. The extent of the increase in the CO2 assimilation rate and PhiPSII and the decrease in F(v)/F(m)-F'(v)/F'(m) by high growth irradiance was smaller under blue light-deficient conditions. These results indicate that blue light helps to boost the acclimation responses of energy partitioning in PSII and CO2 assimilation to high irradiance. Similarly, leaf N, Cyt f and Chl contents per unit leaf area increased by high growth irradiance, and the extent of the increment in leaf N, Cyt f and Chl was smaller under blue light-deficient conditions. Regression analysis showed that the differences in energy partitioning in PSIIand CO2 assimilation between plants grown under high white light and high blue-deficient light were closely related to the difference in leaf N.
  Plant and Cell Physiology 05/2008; 49(4):664-70. · 4.70 Impact Factor
• Article: Analysis of the relationship between blue‐light photon flux density and the photosynthetic properties of spinach (Spinacia oleracea L.) leaves with regard to the acclimation of photosynthesis to growth irradiance

  Ryo MATSUDA, Keiko OHASHI‐KANEKO, Kazuhiro FUJIWARA, Kenji KURATA
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  ABSTRACT: Blue light has been suggested to participate in the acclimation of photosynthesis to growth irradiance. We analyzed the effects of blue light intensity on the photosynthetic properties of leaves with regard to acclimation to irradiance. Spinach (Spinacia oleracea L.) plants were grown under mixtures of blue and red light with blue-light photon flux densities (PFDs) of 0, 30, 100 and 150 µmol m−2 s−1 at a total photosynthetic PFD of 300 µmol m−2 s−1. The light-saturated rate of photosynthesis under white light, leaf N content per unit leaf area, leaf dry weight per unit leaf area and the ratio of cytochrome (Cyt) f content to light-harvesting chlorophyll-binding protein of photosystem II (LHCII) content were evaluated. The photosynthetic rate tended to increase with increasing blue-light PFD up to 100 µmol m−2 s−1, and this was associated with an increase in leaf N content per unit leaf area. However, the increase in leaf N content per unit leaf area did not necessarily result from an increase in leaf dry weight per unit leaf area. The Cyt f to LHCII content ratio increased linearly with increasing blue-light PFD up to 100 µmol m−2 s−1, indicating that plants grown under higher blue-light PFD up to this value resembled plants grown under higher irradiance in terms of N partitioning between electron-transport components and light-harvesting components. This result suggests that the level of blue light is involved only in the acclimation to relatively low growth irradiances at the chloroplast level.
  Soil Science and Plant Nutrition 07/2007; 53(4):459 - 465. · 1.02 Impact Factor
• Article: Growth of rice plants under red light with or without supplemental blue light

  Keiko OHASHI‐KANEKO, Ryo MATSUDA, Eiji GOTO, Kazuhiro FUJIWARA, Kenji KURATA
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  ABSTRACT: The effects of blue light supplementation to red light on growth, morphology and N utilization in rice plants (Oryza sativa L. cv. Sasanishiki and Nipponbare) were investigated. Plants were grown under two light quality treatments, red light alone (R) or red light supplemented with blue light (RB; red/blue-light photosynthetic photon flux density [PPFD] ratio was 4/1), at 380 mol m−2 s−1 PPFD. The biomass production of both cultivars grown under RB conditions was higher than that of plants grown under R conditions. This enhancement of biomass production was caused by an increase in the net assimilation rate (NAR). The higher NAR was associated with a higher leaf N content per leaf area at the whole-plant level, which was accompanied by higher contents of the key components of photosynthesis, including Rubisco and chlorophyll. In Sasanishiki, preferential biomass investment in leaf blades and expansion of wider and thinner leaves also contributed to the enhancement of biomass production. These morphological changes in the leaves were not observed in Nipponbare. Both the changes in physiological characteristics, including leaf photosynthesis, and the changes in morphological characteristics, including leaf development, contributed to the enhancement of biomass production under RB conditions, although the extent of these changes differed between the two cultivars.
  Soil Science and Plant Nutrition 07/2006; 52(4):444 - 452. · 1.02 Impact Factor
• Article: Photosynthetic characteristics of rice leaves grown under red light with or without supplemental blue light.

  Ryo Matsuda, Keiko Ohashi-Kaneko, Kazuhiro Fujiwara, Eiji Goto, Kenji Kurata
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  ABSTRACT: In rice plants grown under red light supplemented with blue light (red/blue-light PPFD ratio was 4/1), photosynthetic rates per unit leaf area measured under white light at 1,600 and 250 micromol m-2) s-1 were higher than those in the plants grown under red light alone. The higher photosynthetic rates were associated with higher total N content of leaves, which was accompanied by larger amounts of key components of photosynthesis-limiting processes, including Rubisco, Cyt f, Chl and LHCII. These results suggested that the increase in total N content of leaves induced by supplemental blue light enhanced both light-saturated and light-limited photosynthesis.
  Plant and Cell Physiology 01/2005; 45(12):1870-4. · 4.70 Impact Factor
• Article: Functional subdivision of trunk visceral mesoderm parasegments in Drosophila is required for gut and trachea development.

  Chie Hosono, Katsumi Takaira, Ryo Matsuda, Kaoru Saigo
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  ABSTRACT: In Drosophila, trunk visceral mesoderm, a derivative of dorsal mesoderm, gives rise to circular visceral muscles. It has been demonstrated that the trunk visceral mesoderm parasegment is subdivided into at least two domains by connectin expression, which is regulated by Hedgehog and Wingless emanating from the ectoderm. We now extend these findings by examining a greater number of visceral mesodermal genes, including hedgehog and branchless. Each visceral mesodermal parasegment appears to be divided into five or six regions, based on differences in expression patterns of these genes. Ectodermal Hedgehog and Wingless differentially regulate the expression of these metameric targets in trunk visceral mesoderm. hedgehog expression in trunk visceral mesoderm is responsible for maintaining its own expression and con expression. hedgehog expressed in visceral mesoderm parasegment 3 may also be required for normal decapentaplegic expression in this region and normal gastric caecum development. branchless expressed in each trunk visceral mesodermal parasegment serves as a guide for the initial budding of tracheal visceral branches. The metameric pattern of trunk visceral mesoderm, organized in response to ectodermal instructive signals, is thus maintained at a later time via autoregulation, is required for midgut morphogenesis and exerts feedback effect on trachea, ectodermal derivatives.
  Development 03/2003; 130(3):439-49. · 6.60 Impact Factor