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ABSTRACT: Commensal Escherichia coli isolates from healthy zoo animals kept in Ostrava Zoological Garden, Czech Republic, were investigated to evaluate the dissemination of extended-spectrum beta-lactamase (ESBL) and plasmid-mediated quinolone resistance (PMQR) genes. A total of 160 faecal samples of various animal species were inoculated onto MacConkey agar with cefotaxime (2 mg L(-1) ) or ciprofloxacin (0.05 mg L(-1) ) to obtain ESBL- or PMQR-positive E. coli isolates. Clonality of E. coli isolates was investigated by multilocus sequence typing (MLST) and pulsed-field gel electrophoresis (PFGE). Plasmids carrying ESBL or PMQR genes were typed by PCR-based replicon typing, plasmid MLST and restriction fragment length polymorphism. Forty-nine (71%, n = 69) cefotaxime-resistant and 15 (16%, n = 94) ciprofloxacin-resistant E. coli isolates harboured ESBL or PMQR genes. Isolates were assigned to 18 sequence types (ST) and 20 clusters according to their macrorestriction patterns by PFGE. The genes blaCTX-M-1 and qnrS1 were detected on highly related IncI1 plasmids assigned to clonal complex 3 (ST3, ST38) and on non-related IncN plasmids of ST1 and ST3, respectively. The gene qnrS1 was located on related IncX1 plasmids. Dissemination of antibiotic resistance is associated with spreading of particular E. coli clones and plasmids of specific incompatibility groups among various animal species. This article is protected by copyright. All rights reserved.
FEMS Microbiology Ecology 05/2013; · 3.41 Impact Factor
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ABSTRACT: Only a few reports exist on the occurrence of resistant bacteria in zoo animals. Therefore, an isolation of multiresistant Escherichia coli from the lungs of a captive South American tapir (Tapirus terrestris) lead to its characterization and further investigation of samples from animals inhabiting the same paddock and from the shared environment. The tapir suffered from an intermandibular abscess and pneumonia and was euthanatized after unsuccessful therapy, including administration of antibiotics. The authors performed selective isolation of extended-spectrum beta-lactamase (ESBL)-positive E. coli strains and identification of resistance genes using polymerase chain reaction. Seven multiresistant, ESBL-producing E. coli isolates were obtained, all belonging to the B2 phylogenetic group and showing identical profile on pulsed-field gel electrophoresis. These isolates carried several resistance genes, including the gene bla(CTX-M-15). This case demonstrates the transmission of related epidemiologically important E. coli isolates whose potential transmission to other animals and zoo staff can be assumed.
Journal of Zoo and Wildlife Medicine 03/2013; 44(1):173-5. · 0.38 Impact Factor
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ABSTRACT: Androlaelaps fahrenholzi is a common, cosmopolitan mite constituting a species complex. This mite is found in nests or on mammal hosts and occasionally on birds. The specific host association between A. fahrenholzi-like mites and Premnoplex brunnescens in Costa Rica is reported here. Adults (females and males), deutonymphs and protonymphs were found on 14 P. brunnescens examined (prevalence was 100 %) with mean abundance 42 (2-222). The nest environment plays an important role in the evolution of parasites and could explain the evolutionary path of Laelapinae towards parasitism. We hypothesize that the colonization of P. brunnescens took place in this context quite recently, from sympatrically living rodents. Morphology and ecology of A. fahrenholzi from P. brunnescens may constitute at least a new variation of A. fahrenholzi, and possibly a new species.
Experimental and Applied Acarology 01/2013; · 1.39 Impact Factor
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Monika Dolejska,
Eva Brhelova,
Hana Dobiasova,
Jana Krivdova,
Jana Jurankova,
Alena Sevcikova,
Lenka Dubska, Ivan Literak,
Alois Cizek,
Martin Vavrina,
Lucia Kutnikova,
Jaroslav Sterba
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ABSTRACT: In this study, extended-spectrum β-lactamase (ESBL)-producing Enterobacteriaceae isolates in children with malignancies hospitalised at a paediatric oncology department in the Czech Republic were investigated. From June 2009 to January 2010, a total of 50 ESBL-producing faecal isolates of Enterobacteriaceae were obtained from 28 patients. These isolates were characterised with regard to ESBL enzymes, plasmid-mediated quinolone resistance genes, multilocus sequence typing (MLST) and plasmids conferring resistance to cephalosporins and fluoroquinolones. ESBL-producing isolates included Klebsiella pneumoniae (n=36), Escherichia coli (n=7), Klebsiella oxytoca (n=3), Enterobacter cloacae (n=2) and Citrobacter freundii (n=2). Klebsiella pneumoniae isolates belonged to 7 MLST types, including sequence types ST280, ST321, ST323 and ST416 as well as the novel types ST626, ST627 and ST628. The multiresistant epidemic clone E. coli B2-O25b-ST131 was detected in one patient. The gene bla(CTX-M-15) was found on large conjugative IncFII(K) plasmids along with bla(TEM-1), bla(OXA-1), qnrB1, aac(6')-Ib-cr, strA, sul2, aac(3')-II and tet(A) genes in most isolates. Dissemination of IncFII(K) plasmids among various Enterobacteriaceae isolates was considered an important aspect of nosocomial colonisation in the wards by Enterobacteriaceae species producing ESBLs. This is the first study documenting multiple antibiotic resistance elements, including qnr genes, in IncFII(K) plasmids in various bacterial species isolated in a single hospital department. The results highlight the evolution of IncFII(K) plasmids into new variants containing novel antibiotic resistance elements and their important role in spreading ESBL-producing bacteria among hospitalised patients.
International journal of antimicrobial agents 10/2012; · 3.03 Impact Factor
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ABSTRACT: Extraintestinal Escherichia coli infections are associated with extraintestinal pathogenic E. coli (ExPEC) strains. A total of 114 E. coli isolates were characterized regarding their antimicrobial resistance in a prospective study of 319 broilers from 12 slaughterhouses in the Czech Republic, a European Union member, during 2008. PCR-based assays to define ExPEC-associated traits were performed in resistant strains. Consumption of antimicrobial drugs by poultry in the Czech Republic was also analyzed. Antibiotic resistance was detected in 82% of isolates. Resistance to nalidixic acid and ciprofloxacin was predominant. Plasmid-mediated quinolone resistance genes, qnrB19 and qnrS1, were detected in 1 and 3 of 93 resistant isolates, respectively. Twenty-three percent of resistant isolates were considered as ExPEC. In total, 972 kg of flumequine, enrofloxacin, and difloxacin were used in poultry in the Czech Republic during 2008. High prevalence of broilers with ciprofloxacin-resistant E. coli isolates was linked to consumption of quinolones in poultry. Broilers may comprise an important vehicle for community-wide dissemination of fluoroquinolone-resistant E. coli and ExPEC. Withdrawal of fluoroquinolones from use in chicken production should be seriously considered in the Czech Republic and the European Union as well.
Microbial drug resistance (Larchmont, N.Y.) 09/2012; · 1.99 Impact Factor
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ABSTRACT: This study's aims were to assess the prevalence of, and to characterize, vancomycin-resistant enterococci (VRE) from rooks (Corvus frugilegus) wintering in Europe during 2010/2011. Faeces samples were cultivated selectively for VRE and characterized. Pulsed-field gel electrophoresis and multilocus sequence typing (MLST) were used to examine epidemiologic relationships of vanA-containing VRE. The vanA-carrying VRE were tested in vitro for mobility of vancomycin resistance traits. VRE were found in 62 (6%) of 1073 rook samples. Enterococcal species diversity comprised Enterococcus gallinarum (48 isolates), followed by E. faecium (9) and E. faecalis (5). Eight VRE harboured the vanA and ermB genes. Seven vanA-carrying VRE originated from the Czech Republic and one from Germany. All vanA-carrying VRE were identified as E. faecium. Based on MLST analysis, six vanA-positive isolates were grouped as ST92 type, one isolate belonged to ST121, and the remaining one was described as a novel type ST671. Seven out of eight isolates were able to transfer the vancomycin resistance trait via filter mating with a transfer rate of 8.95 ± 3.25 × 10(-7) transconjugants per donor. In conclusion, wintering rooks in some European countries may disseminate clinically important enterococci and pose a risk for environmental contamination.
Environmental Microbiology 09/2012; · 5.84 Impact Factor
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ABSTRACT: In total, 142 birds, mostly passerines, belonging to 42 species were examined for the presence of ticks in 3 locations in Mato Grosso do Sul Brazil during 2006. Seven birds (5%) were infested with 4 nymphs of Amblyomma calcaratum (Ramphocelus carbo, 3 infested/12 examined) and 5 larvae of Amblyomma sp. (Furnarius rufus, 2/5; Turdus leucomelas, 1/6; and Paroaria capitata, 1/8). All 4 nymphs of A. calcaratum tested by polymerase chain reaction targeting rickettsial genes gltA and ompA and by amplicon sequencing were found to be infected with a Rickettsia sp. strain NOD, a Rickettsia parkeri-like agent. A. calcaratum infected with a rickettsial bacterium was found for the first time.
Ticks and Tick-borne Diseases 08/2012;
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ABSTRACT: We examined 77 Ixodes ricinus ticks found on 33 out of 120 common nightingales (Luscinia megarhynchos) sampled in the Czech Republic in 2008 for the presence of Borrelia spirochetes, Anaplasma phagocytophilum, Rickettsia spp., and Babesia spp. We detected Borrelia garinii (in 4% of ticks), A. phagocytophilum (1%), Rickettsia helvetica (3%), a novel strain of Rickettsia sp. (sister taxon of R. bellii; 1%), and Babesia sp. EU1 (1%). Thus, we conclude that nightingales are unlikely to be important reservoir hosts for tick-borne pathogens.
Ticks and Tick-borne Diseases 07/2012; 3(4):265-8.
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ABSTRACT: Amazonian birds were caught and examined for the presence of ectoparasites in the Allpahuayo Mishana National Reserve near Iquitos, Peru, from 13 to 16 August 2011. A total of 40 birds representing 16 species were examined. Two birds (5%) were infested with 2 larvae of Amblyomma varium Koch, 1844, and one nymph of A. calcaratum Neumann, 1899. The 2 larvae of A. varium were infected with Rickettsia bellii. This is the first report of R. bellii in A. varium and also the first record of this rickettsia in Peru. In addition, an immature A. calcaratum is reported from Peru for the first time.
Ticks and Tick-borne Diseases 06/2012; 3(4):254-6.
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Ivan Literak,
Maria Micudova,
Dagmar Tausova,
Alois Cizek,
Monika Dolejska,
Ivo Papousek,
Jakub Prochazka,
Jiri Vojtech,
Frank Borleis,
Lisa Guardone,
Sebastian Guenther,
Jozef Hordowski,
Cyrille Lejas,
Wlodzimierz Meissner,
Benito Fuertes Marcos,
Marko Tucakov
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ABSTRACT: This study concerned the occurrence of fecal bacteria with plasmid-mediated quinolone resistance (PMQR) genes in rooks (Corvus frugilegus, medium-sized corvid birds) wintering in continental Europe during winter 2010/2011. Samples of fresh rook feces were taken by cotton swabs at nine roosting places in eight European countries. Samples were transported to one laboratory and placed in buffered peptone water (BPW). The samples from BPW were enriched and subcultivated onto MacConkey agar (MCA) supplemented with ciprofloxacin (0.06 mg/L) to isolate fluoroquinolone-resistant bacteria. DNA was isolated from smears of bacterial colonies growing on MCA and tested by PCR for PMQR genes aac(6')-Ib, qepA, qnrA, qnrB, qnrC, qnrD, qnrS, and oqxAB. All the PCR products were further analyzed by sequencing. Ciprofloxacin-resistant bacteria were isolated from 37% (392 positive/1,073 examined) of samples. Frequencies of samples with ciprofloxacin-resistant isolates ranged significantly from 3% to 92% in different countries. The qnrS1 gene was found in 154 samples and qnrS2 in 2 samples. The gene aac(6')-Ib-cr was found in 16 samples. Thirteen samples were positive for qnrB genes in variants qnrB6 (one sample), qnrB18 (one), qnrB19 (one), qnrB29 (one), and qnrB49 (new variant) (one). Both the qnrD and oqxAB genes were detected in six samples. The genes qnrA, qnrC, and qepA were not found. Wintering omnivorous rooks in Europe were commonly colonized by bacteria supposedly Enterobacteriaceae with PMQR genes. Rooks may disseminate these epidemiologically important bacteria over long distances and pose a risk for environmental contamination.
Microbial drug resistance (Larchmont, N.Y.) 06/2012; · 1.99 Impact Factor
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Folia Microbiologica 05/2012; 57(5):439-42. · 0.68 Impact Factor
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ABSTRACT: We studied blood parasites in wild birds within Hitoy Cerere Biological Reserve and Barbilla National Park in Costa Rica during
the rainy season of 2004. We examined blood samples from 248 and 114 birds, respectively. Protozoan parasites of the genus
Haemoproteus as well as microfilariae were found. Prevalence of Haemoproteus in birds was 0.8% and 4.4% in Hitoy Cerere and Barbilla, respectively, and differences were significant. Prevalence of infection
by microfilariae was 8.1% and 3.5%, respectively, however, differences were not significant. Based on morphological characteristics,
we divided microfilariae into two groups and nine morphotypes. In Hitoy Cerere, there were microfilariae of all nine morphotypes
whereas in Barbilla we only found two morphotypes.
Acta Parasitologica 04/2012; 54(3):197-204. · 0.79 Impact Factor
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ABSTRACT: Resistance in Escherichia coli isolates colonizing gastrointestinal tracts of dogs, cats, and their owners in Northern Kenya was investigated with an emphasis on extended-spectrum beta-lactamases (ESBLs). Totals of 47 (22%, n = 216), 2 (4%, n = 50), and 4 (17%, n = 23) CTX-M-15-producing E. coli isolates were obtained from dogs, cats, and humans, respectively. CTX-M-15-producing E. coli isolates with identical PFGE profiles were detected in animals and humans living in the same area.
Antimicrobial Agents and Chemotherapy 04/2012; 56(7):4013-7. · 4.84 Impact Factor
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ABSTRACT: A total of six cases and 37 suspect cases of skin avipoxvirus infection in great tits (Parus major) have been described in central Europe since 2005. Most of the cases were diagnosed during the winter season, from October
to March. Analyses of the 4b core protein gene showed identical or almost identical DNA sequence in six isolates (one from
Austria, three from Hungary, and two from Czech Republic). A morphogenesis of the avipoxvirus including a constitution of
acidophilic-type inclusions (ATIs) was documented by electron microscopy in cells from lesions on great tits found in Czech
Republic. Moreover, the ATI body protein gene was demonstrated using polymerase chain reaction in the isolate that caused
ATIs. A number of new cases of poxvirus infection in great tits have emerged in central Europe since 2005, and the reason
for this sudden increase remains unknown.
KeywordsBird-Virus-Disease-Czech Republic-Slovakia-Germany
European Journal of Wildlife Research 04/2012; 56(4):529-534. · 1.31 Impact Factor
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ABSTRACT: Faecal Escherichia coli strains were isolated from great cormorants (Phalacrocorax carbo) and mallards (Anas platyrhynchos), which are commonly occurring waterbirds in Europe, and studied for resistance to cephalosporins and fluoroquinolones.
Cloacal swabs or faeces from great cormorants and mallards in Central Europe were cultivated to isolate Escherichia coli strains with extended-spectrum β-lactamase (ESBL) and plasmid-mediated quinolone resistance (PMQR) genes.
Ten ESBL-producing E. coli with the bla(CTX-M-15) or bla(CTX-M-27) gene were isolated from eight great cormorants (1.6%, n = 499). The bla(CTX-M) genes were harboured by plasmids of F and I1 incompatibility groups. CTX-M-27-producing isolates were identified as the epidemiologically important B2-O25b-ST131 clone. No ESBL-producing E. coli was isolated from 305 mallards. Eight E. coli isolates with PMQR genes [six aac(6')-Ib-cr and two qnrS1] were detected in six great cormorants (1.2%). Seventeen strains with qnrS1 were detected in 17 mallards (6%). The PMQR genes were located on plasmids of incompatibility groups F, N or X2. ESBL and PMQR genes were found on conjugative plasmids, enabling the horizontal spread of resistance.
Both great cormorants and mallards can spread epidemiologically important antimicrobial-resistant E. coli isolates to water bodies throughout Europe.
Journal of Antimicrobial Chemotherapy 02/2012; 67(5):1103-7. · 5.07 Impact Factor
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ABSTRACT: The global occurrence of antibiotic resistance genes in bacteria in water environments is an increasing concern. Treated wastewater was sampled daily over a 45 day period from the outflow of a municipal wastewater treatment plant in Brno, Czech Republic, and examined for extended-spectrum β-lactamase (ESBL)-producing bacteria.
Water samples were cultivated on MacConkey agar with cefotaxime (2 mg/L) and individual colonies were examined for ESBL production. Phenotypic ESBL-positive bacteria identified as Escherichia coli or Klebsiella spp. were tested for the presence of antibiotic resistance genes, the virulence gene afa/dra and the bla(CTX-M) upstream region. Genetic relatedness was analysed by PFGE, multilocus sequence typing and plasmid analysis.
A total of 68 ESBL-producing Enterobacteriaceae isolates were detected in 34 out of 45 wastewater samples. ESBL-producing isolates included 26 E. coli isolates, 4 Klebsiella pneumoniae isolates and 1 Klebsiella oxytoca isolate. The pandemic and multiresistant B2-O25b-ST131 clone was predominant, being detected among 19 E. coli isolates, and 17 of the B2-O25b-ST131 isolates were positive for the FIA replicon and the afa/dra operon and had an IS26 element flanking bla(CTX-M-15). Seventeen of the B2-O25b-ST131 isolates showed closely related PFGE profiles (defined by 84% band similarity) and belonged to identical clonal groups.
The results highlight the inadequacy of the treatment process in removing multiresistant bacteria from municipal wastewater and point to a risk of transmission of clinically important multiresistant strains, such as the pandemic ST131 clone, to the environment. This is the first study demonstrating the pandemic ST131 clone in wastewater.
Journal of Antimicrobial Chemotherapy 09/2011; 66(12):2784-90. · 5.07 Impact Factor
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ABSTRACT: The occurrence and epidemiology of extended-spectrum beta-lactamase (ESBL)-producing Escherichia coli in the environment of turkey farms in the Czech Republic were studied.
Extended-spectrum beta-lactamase-producing E. coli isolates were found on 8 (20%) of 40 turkey farms surveyed. A total of 200 environmental smears were examined, and a total of 25 ESBL-producing E. coli were isolated. These isolates were analysed using XbaI pulsed-field gel electrophoresis and divided into nine pulsotypes. Most of the isolates harboured the gene bla(SHV-12) on a 40-kb plasmid of the IncFII group with an identical EcoRV restriction profile. Indistinguishable or clonally related SHV-12-producing isolates belonging to the same pulsotypes were found at some unrelated farms.
Widespread occurrence of ESBL-producing E. coli isolates with bla(SHV-12) carried on IncFII plasmids in meat production flocks in the Czech Republic was demonstrated.
Results indicate vertical transmission of ESBL-producing E. coli within the turkey production pyramid. The study shows the risk of multiresistant ESBL-producing bacteria and antibiotic-resistance genes being transmitted to humans via the food chain.
Letters in Applied Microbiology 06/2011; 53(3):271-7. · 1.62 Impact Factor
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ABSTRACT: Based on experiments with 10 defined strains of Escherichia coli, we present a new method for bacterial phenotyping using SELDI-TOF mass spectrometry. Changes in bacterial protein profiles in the context of the time of cultivation and the antibiotic environment were minimal. Proteom subprofiling may further distinguish between strains with specific susceptibility to antimicrobials. Mass spec-based methods may become common in the future of bacterial pathogen identification in clinical microbiology diagnostics.
Anaerobe 05/2011; 17(6):444-7. · 2.41 Impact Factor
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ABSTRACT: The study was performed in the Czech Republic during 2007 to 2009. Of Escherichia coli isolates from 275 children aged 6 weeks, 36% (n = 177) were resistant to 1 to 7 antibiotics. Of isolates from 253 children aged 6 to 17 years, 24% (n = 205) were resistant to 1 to 5 antibiotics. There was no significant difference in the prevalences of antibiotic-resistant E. coli isolates between these groups of children, even though the consumptions of antibiotics were quite different.
Antimicrobial Agents and Chemotherapy 04/2011; 55(6):3005-7. · 4.84 Impact Factor
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ABSTRACT: A description and illustrations are given for Myrsidea povedai n. sp. from the black-and-yellow silky-flycatcher Phainoptila melanoxantha. The female of M. povedai is distinguished from those of other species of Myrsidea from Costa Rican passerine hosts by a unique combination of the following characteristics: (1) well-developed hypopharynx, (2) well-defined median gap in the rows of tergal setae and another gap between groups of setae on lateral side of tergites II-VII and the most central seta, and (3) enlarged metanotum with at least 23 setae. These characters place M. povedai close to Myrsidea campestris from Euneornis campestris and Myrsidea marini from Pezopetes capitalis (both from the Emberizidae). The female of M. povedai can be easily separeted from both aforementioned species by the abdomen without conspicuously enlarged tergites. Moreover, the male of M. povedai is characterized by a unique male genital sclerite, which is quite long (0.13-0.15), tapered apically, with a long median line, and without subapical processes. This is the first record of a chewing louse from this host and the first record of Myrsidea from the passerine family Bombycillidae. All 7 birds examined in Costa Rica in 2010 were parasitized with M. povedai. Mean abundance was 11.6, with intensity range 4-27 lice per bird.
Journal of Parasitology 02/2011; 97(4):593-5. · 1.40 Impact Factor
