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ABSTRACT: The purpose of this study was to establish the distribution, speciation and bioavailability of mercury in mangrove sediments. A systemic survey of surficial sediments from 13 mangrove wetlands of China was carried out. Hg concentrations ranged from 2.3-903.6ngg(-1), with an average value of 189.4ngg(-1). Of the 13 areas surveyed, the Hg content in sediments was similar to background levels in 6 areas but was much higher in the other seven areas. Hg levels were affected by natural and anthropogenic factors, including terrestrial pollutants, geomorphic properties, and indirectly by economic status. Hg levels were positively correlated with organic matter, pH, and silt and clay fractions, but Hg was negatively correlated with sand fraction. In most mangrove wetlands, Hg existed primarily in the form of volatile Hg. Hg is easily bioaccumulated in mangrove wetlands and may be the natural source of Hg emissions to the atmosphere.
Marine pollution bulletin 06/2009; 58(9):1319-25. · 2.63 Impact Factor
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The Rangeland Journal 01/2008; 30(2). · 1.40 Impact Factor
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ABSTRACT: Economic costs and benefits for different grassland production systems were analysed. Comparisons included one native grassland (alpine meadow dominated by sedges) system, four perennial monocultures of smooth bromegrass (Bromus inermis Leyss, SB), Siberian wild ryegrass (Elymus sibricus Linn., SW), drooping wild ryegrass (Elymus nutans Griseb, DW) and crested wheatgrass (Agropyron cristatum Gaertn., CW), three mixtures of these grasses (SB + DW, SB + SW + CW and SB + SW + DW + CW), and two annual monocultures of forage oats (FO) and annual ryegrass (Lolium annual, AR) in the alpine grasslands of Qinghai-Tibet, China. Perennial grass monocultures of SW and DW and perennial grass mixtures of SB + SW + DW + CW and SB + SW + CW had higher forage yields, total revenues, output:input ratios and net profits than native grassland. These grasses and mixtures can be used to reseed native grassland and improve degraded grassland in the alpine region of the Qinghai-Tibetan Plateau. Perennial grass mixtures can replace FO for more sustainable agricultural production systems as they are comparable in economic value and superior in ecological value to FO.
Grass and Forage Science 11/2007; 62(4):405 - 415. · 1.10 Impact Factor
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ABSTRACT: A web-based version of the RLIMS-P literature mining system was developed for online mining of protein phosphorylation information from MEDLINE abstracts. The online tool presents extracted phosphorylation objects (phosphorylated proteins, phosphorylation sites and protein kinases) in summary tables and full reports with evidence-tagged abstracts. The tool further allows mapping of phosphorylated proteins to protein entries in the UniProt Knowledgebase based on PubMed ID and/or protein name. The literature mining, coupled with database association, allows retrieval of rich biological information for the phosphorylated proteins and facilitates database annotation of phosphorylation features.
Bioinformatics 08/2006; 22(13):1668-9. · 5.47 Impact Factor
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ABSTRACT: MOTIVATION: A large volume of experimental data on protein phosphorylation is buried in the fast-growing PubMed literature. While of great value, such information is limited in databases owing to the laborious process of literature-based curation. Computational literature mining holds promise to facilitate database curation. RESULTS: A rule-based system, RLIMS-P (Rule-based LIterature Mining System for Protein Phosphorylation), was used to extract protein phosphorylation information from MEDLINE abstracts. An annotation-tagged literature corpus developed at PIR was used to evaluate the system for finding phosphorylation papers and extracting phosphorylation objects (kinases, substrates and sites) from abstracts. RLIMS-P achieved a precision and recall of 91.4 and 96.4% for paper retrieval, and of 97.9 and 88.0% for extraction of substrates and sites. Coupling the high recall for paper retrieval and high precision for information extraction, RLIMS-P facilitates literature mining and database annotation of protein phosphorylation.
Bioinformatics 07/2005; 21(11):2759-65. · 5.47 Impact Factor
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ABSTRACT: In the alpine region of the Qinghai-Tibetan Plateau four indigenous perennial grass species Bromus inermis (BI), Elymus sibiricus (ES), Elymus nutans (EN) and Agropyron cristatum (AC) were cultivated as three mixtures with different compositions and seeding rates, BI + EN, BI + ES + AC and BI + ES + EN + AC. From 1998 to 2001 there were three different weeding treatments: never weeded (CK); weeded on three occasions in the first year (1-y) and weeded on three occasions in both the first and second year (2-y) and their effect of grass combination and interactions on sward productivity and persistence was measured. Intense competitive interference by weedy annuals reduced dry matter (DM) yield of the swards. Grass combination significantly affected sward DM yields, leaf area index (LAI) and foliar canopy cover and also species composition DM and LAI, and species plant cover. Interaction between weeding treatments and grass combination was significant for sward DM yield, LAI and canopy cover, but not on species composition for DM, LAI or species plant cover. Grass mixture BI + ES + EN + AC gave the highest sward DM yield and LAI for both weeding and non-weeding treatments. Species ES and EN were competitively superior to the others. Annual weedy forbs must be controlled to obtain productive and stable mixtures of perennial grasses, and germination/emergence is the most important time for removal. Weeding three times (late May, late June and mid-July) in the establishment year is enough to maintain the production and persistence of perennial grass mixtures in the following growing seasons. Extra weeding three times in the second growing year makes only a slight improvement in productivity.
Weed Research 03/2005; 45(2):114 - 120. · 1.92 Impact Factor
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ABSTRACT: In 1998, seeds of four cultivated native perennial grasses, Bromus inermis (B), Clinelymus nutans (C), Elymus nutans (E) and Agropyron cristatum (A), were sown as mixtures with different seed rates in three combinations (B + C, B + E + A and B + E + C + A) in a field study in the north-eastern part of the Qinghai-Tibetan Plateau, China. A grazing experiment was conducted in 2000 to investigate the performance of these grass mixtures at leaf, plant and sward scales under different grazing intensities (GI). Four GIs, expressed as the proportion of herbage consumed by Tibetan lambs in relation to the available biomass (IP), were applied in the summer: no grazing, and 0·30, 0·50 and 0·70 of IP. Tiller numbers of the grasses increased and leaf photosynthetic rate, sward leaf area index (LAI) and herbage mass declined with increase in GI. No effect of GI on specific leaf area was observed. Interactions between GI and grass mixtures on the dynamics of species composition, swards’ LAI and herbage mass were found. Large fluctuations in species composition with different GIs showed the poor species compatibility and sward persistence of these grass mixtures under high GI by sheep.
Grass and Forage Science 08/2004; 59(3):298 - 306. · 1.10 Impact Factor
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ABSTRACT: The productivity and nutritive value of some cultivated perennial grasses, Bromus inermis (B), Elymus sibricus (S), E. nutans (N), Agropyron cristatum (A), Poa crymophila (P) and mixtures B + N, S + A, B + S + A, S + B + N, N + S + A, B + S + N + A, B + N + A + P, B + S +A + P and S + N + A + P, in the alpine region of the Tibetan Plateau were investigated. Elymus nutans and E. sibricus and the mixtures, B + S + N + A, B + S +A + P and S + N + A + P, were most productive with yields of dry matter (DM) of between 11 000 and 14 000 kg−1 of biomass annually in the second harvest year. Acid-detergent fibre (ADF) concentrations increased (P < 0·05), and crude protein (CP) concentrations and in sacco DM degradability values decreased (P < 0·05) with the maturity of the cultivated grasses. Swards, based on these species and mixtures, have the potential to be the main choices for cultivation in the Tibetan Plateau because they produce more nutrients than other grass species and mixtures. Late August (flowering stage of dominant grasses) is the optimum time for harvesting as the yield of rumen-degradable CP is highest that of DM relatively high and the DM degradability is satisfactory.
Grass and Forage Science 12/2003; 58(3):302 - 308. · 1.10 Impact Factor
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ABSTRACT: We have identified a novel exon 11 of the human prolactin receptor (hPRLR) gene that is distinct from its rodent counterparts and have demonstrated the presence of two novel short forms of the hPRLR (S1(a) and S1(b)), which are derived from alternative splicing of exons 10 and 11. S1(a) encodes 376 amino acids (aa) that contain partial exon 10 and a unique 39-aa C-terminal region encoded by exon 11. S1(b) encodes 288 aa that lack the entire exon 10 and contains 3 amino acids at the C terminus derived from exon 11 using a shifted reading frame. These short forms, which were found in several normal tissues and in breast cancer cell lines, were expressed as cell surface receptors and possessed binding affinities comparable with the long form. Unlike the long form, neither short form was able to mediate the activation of the beta-casein gene promoter induced by prolactin. Instead they acted as dominant negative forms when co-expressed with the long form in transfected cells. Due to a marked difference in the cellular levels between the two short forms in transfected cells, S1(b) was more effective in inhibiting the prolactin-induced activation of the beta-casein gene promoter mediated by the long form of the receptor. The low cellular level of S1(a) was due to its more rapid turnover than the S1(b) protein. This is attributable to specific residues within the C-terminal unique 39 amino acids of the S1(a) form and may represent a new mechanism by which the hPRLR is modulated at the post-translational level. Since both short forms contain abbreviated cytoplasmic domains with unique C termini, they may also exhibit distinct signaling pathways in addition to modulating the signaling from the long form of the receptor. These receptors may therefore play important roles in the diversified actions of prolactin in human tissues.
Journal of Biological Chemistry 12/2001; 276(44):41086-94. · 4.77 Impact Factor
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ABSTRACT: The 5'-untranslated region of the human prolactin receptor (hPRLR) gene contains two alternative first exons, hE1(3), the human counterpart of the rat and mouse E1(3) and a novel human type of alternative first exon termed hE1N, also a common non-coding exon 2 and a third exon containing the translation initiation codon. hE1(3) was localized approximately 800 bp 5' from the hE1N in the genome. The two distinct first exons hE1(3) and hE1N are expressed in human breast tissue, breast cancer cells, gonads and liver. Overall, the transcript containing hE1(3) is prevalent in most tissues. The coding region of the gene comprises eight exons (exon 3-10), in which exon 10 encodes most of the intracellular domain. hE1(3) and hE1N are transcribed from alternative promoters hPIII and hP(N), respectively. The hPIII, containing identical Sp1 and C/EBP elements as in the rodent promoters, shares 81% similarity in the region -480/-106 to both the rat and mouse. The novel promoter hP(N) contains putative binding sites for ETS-family proteins and a half-site for nuclear receptors. Therefore, both promoters likely utilize distinct mechanisms in controlling the hPRLR gene transcription. The different promoter utilization of the hPRLR gene in diverse tissues may confer differential prolactin response through activation of different promoters.
Journal of Clinical Endocrinology & Metabolism 04/1999; 84(3):1153-6. · 6.50 Impact Factor
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ABSTRACT: A total of 2230 yak cows (5-13 years of age) in two populations with different milking systems were investigated. One population had a system of milking once a day (MOD), and the other population twice a day (MTD). The average milk yield of MOD cows was 0.7 +/- 0.2 kg/day within a milking period of 109 +/- 9 days. This compared with an average of 1.24 +/- 0.3 kg/day in 127 +/- 6 days in MTD yaks (p < 0.01). The cows showed a calving rate of 71% under the MOD system and 51.4% under the MTD system. Three farms with a total of 104 MTD cows between six and 12 years of age were used to provide three different feeding groups. The groups were fed with, or without oat hay or highland barley straw in amounts of 1-1.5 kg/head/day from December to April. The three farms were designated as Farm I, Farm II, and Farm III. Farm I had 41 cows with body weight of 230 +/- 67 kg each for grazing with no supplement (GNS). Farm II had 30 animals with body weight of 216 +/- 28 kg each for grazing + oat hay (GOH). Farm III had 33 animals body weight of 221 +/- 34 kg each for grazing + highland barely straw (GBS). The calving rates of the cows in GOH and GBS were 23 and 19% higher, respectively, than GNS cows (p < 0.01), and the highest rate reached 76.7% in GOH. The live weight loss of the cows in GNS was considerably higher (p < 0.01) than in the two other groups. Ten GOH cows and 12 GNS cows were used to collect milk samples for measuring the progesterone concentration using RIA kits provided by IAEA/FAO: Milk was sampled every five days from calving until 90 days postpartum. In the unsupplemented group, milk progesterone (P4) levels suggested that cows had started cyclic ovarian activity by 40 days postpartum, whereas only 25% had been observed in estrus. In the supplemented group, 80% of cows had started cyclic ovarian activity by the same time and 70% had been seen in estrus. Two types of cyclic activity in terms of progesterone changed were found. With Type I (normal), 50 and 80% of cows from GNS and GOH, respectively, had cyclic changes of P4 in milk at 40 days postpartum. With Type II, the P4 levels in the milk remained 0.89 ng/ml until 90 days postpartum. A total of 46 grazing cows between five and 13 years of age (body weight 214 +/- 68 kg) was used to collect blood samples to measure concentrations of nutrient of metabolites at two weeks pre-calving and at two weeks, two months and four months postcalving, respectively. The concentrations of nutrient metabolites [albumin, globulin, urea, beta-hydroxybutyrate (BHB) and inorganic phosphorus] suggested general underfeeding of energy and protein in the winter/late pregnancy period with some recovery in lactation. Energy constraints appeared again as the summer progressed. No dietary phosphate deficiency was found. BHB and albumin testing on serum yaks could be a useful tool to identify poor nutritional status during the winter and so illustrate the need for supplementation.
Preventive Veterinary Medicine 01/1999; 38(2-3):195-206. · 2.05 Impact Factor
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ABSTRACT: Three promoters are operative in the rat prolactin receptor gene as follows: promoter I (PI) and II (PII) are specific for the gonads and liver, respectively, and promoter III (PIII) is common to several tissues. To investigate the mechanisms controlling the activity of promoter III, its regulatory elements and transcription factors were characterized in gonadal and non-gonadal cells. The TATA-less PIII domain was localized to the region -437 to -179 (ATG +1) containing the 5'-flanking region and part of the non-coding first exon. Within the promoter domain, a functional CAAT-box/enhancer binding protein (C/EBP) (-398) and an Sp1 element (-386), which bind C/EBPbeta and Sp1/Sp3, respectively, contribute individually to promoter activation in gonadal and non-gonadal cells. However, significant redundancy was demonstrated between these elements in non-gonadal cells. Additionally, an element within the non-coding exon 1 (-338) is also required for promoter activity. Activation of PIII by the widely expressed Sp1 and C/EBPbeta factors explains its common utilization in multiple tissues. Moreover, whereas the rat and mouse PIII share similar structure and function, the mouse PI lacks the functional SF-1 element and hence is inactive. These findings indicate that promoter III is of central importance in prolactin receptor gene transcription across species.
Journal of Biological Chemistry 11/1998; 273(40):26225-35. · 4.77 Impact Factor
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ABSTRACT: Studies of the mechanisms controlling the expression of the rat luteinizing hormone receptor gene were pursued by characterization of the gene structure and identification of regulatory protein binding domains in the 5'-non-coding region of the gene and of 3' non-coding functional domains responsible for generation of the major mRNA forms. The coding region of the rat LHR gene contains 10 introns and 11 exons, of which the first 10 exons comprise the hormone binding extracellular domain and exon 11, the seven transmembrane/G protein coupling module. Several alternative spliced variants of the LHR were identified that conform to deletions of complete and/or partial exons. Within the 6.2 kb of the 3'-non-coding region, two functional LHR pA domains (H1) and (H2) produce two sets of major mRNA transcripts, each coding for both holoreceptor and the form B splice variant. The H1 pA domain is unique to LHR and may represent a recombinant insertion domain. The functional efficiency of each pA domain is related to the specific pA signals, distal downstream elements, and tissue-specific factors. A TATA-less promoter region is present within the 173 bp 5'flanking region of the gene, with Initiator (Inr) elements at transcriptional start sites. Transcription is dependent on the binding of the Sp1 protein at two Sp1 domains that each contribute equally to transcript initiation. Promoter activity is regulated by at least three additional DNA domains, R (-1266 to -1307 bp), C-box (-42 to -73 bp) and M1 (-24 to -42 bp) that bind multiple trans-factors in a tissue-specific manner. Basal promoter activity is enhanced by a functional M1 domain in LHR-expressing mouse Leydig tumor cells (MLTC) but not in non-expressing CHO cells. C-box binding factors either inhibit promoter activity or block inhibition through overlapping but not identical DNA binding domains that carry AP-2 and NF-1 elements. Removal of the AP-2 element within the C-box results in MLTC-specific transcriptional activation that may involve an MTLC M1/C-box interaction. In addition, competition for C-box factors by an upstream regulatory element (R) that is only inhibitory in CHO cells, indicates that both C-box binding factors compete for this upstream (R) domain in a tissue-specific manner. Competition between the inhibitory and neutral DNA binding factors within both upstream (R) and promoter domains (C-box) could provide a mechanism for the control of LH receptor gene expression in gonadal cells.(ABSTRACT TRUNCATED AT 400 WORDS)
The Journal of Steroid Biochemistry and Molecular Biology 07/1995; 53(1-6):283-91. · 3.05 Impact Factor
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ABSTRACT: We present 6.2 kb of the 3'-noncoding region sequence of the rat luteinizing hormone receptor (LHR) gene and identification of two functional polyadenylation (pA) domains, H1 (nt 2368-2491) and H2 (nt 5579-5768) responsible for 3'-end processing of the 2.6/2.3 kb and the 5.8 kb LHR mRNA, respectively. Two identical copies of pA elements AAUAUA in H1 and of AAUAAA in H2 account for micro-heterogeneous poly(A) addition at each of the two pA regions. Both LH holoreceptor and major splice variant form B (lacking the first 266 bp of exon 11) are identified in H1-terminated (2.6 kb and 2.3 kb) and H2-terminated (5.8 kb) mRNA transcripts. A rodent repetitive DNA LINE R domain 3' of H1 within the major 5.8 kb species and a B2 element downstream of H2 were identified. Alignment of the 3'-noncoding region of LHR with TSH, FSH and beta 2-adrenergic receptors indicate that H1 pA signal is unique to the LHR and may represent an insertion domain.
Biochimica et Biophysica Acta 03/1994; 1220(3):333-7. · 4.66 Impact Factor
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ABSTRACT: Three predominant prolactin receptor (PRL-R) mRNA species of 9.7, 2.1 and 1.8 kb and two minor species of 4.6 and 2.6 kb were demonstrated in the rat ovary. The long transmembrane form of the ovarian PRL-R is derived from the 9.7 kb and 4.6 kb species. The 2.6 kb species could be a variant form of this receptor with truncated or altered extracellular domain, while the 1.8 and 2.1 kb species correspond to the short transmembrane receptor form with truncated cytoplasmic domain. All five mRNA species were expressed and regulated in a developmental stage-specific manner during gonadotropin-induced ovarian maturation, luteinization and subsequent desensitization by gonadotropin treatment. Coordinate regulation of prolactin receptor binding activities and mRNA levels was observed during gonadotropin-induced heterologous up- and down-regulation of ovarian receptor sites.
Biochemical and Biophysical Research Communications 12/1991; 181(1):219-25. · 2.48 Impact Factor
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ABSTRACT: Agonist-induced changes in expression and mRNA levels of luteinizing hormone (LH) receptors were compared during stimulation of ovarian follicular maturation and luteinization by gonadotropic hormones. Three major species of LH receptor mRNA, 5.8, 2.6 and 2.3 kb, were present throughout differentiation and changed similarly, the 5.8 kb species being consistently more abundant than the smaller forms. The increased expression of plasma-membrane LH receptors in preovulatory follicles and luteinized ovaries and their homologous down-regulation during follicular and luteal desensitization were closely correlated with the steady-state receptor mRNA levels. The reappearance of LH receptors following desensitization during the luteal stage was preceded by an increase in mRNA levels. These studies have demonstrated that the expression of LH receptors during follicular maturation, ovulation and desensitization is related to the prevailing levels of receptor mRNA in the ovary.
FEBS Letters 12/1990; 274(1-2):181-4. · 3.54 Impact Factor
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ABSTRACT: Two novel lactogen receptor cDNA clones (2.1 and 1.2 kb) were isolated from a rat ovarian cDNA library. Nucleotide sequence of the 2.1 kb clone codes for a 610 aa receptor (nonglycosylated mol. wgt. 66,000 D) with an extracellular domain, a transmembrane region and an intracellular domain, and exhibited significant overall similarity with the rat liver receptor (310 aa) and both rabbit mammary and human hepatoma receptors (616 and 622 aa). However, the ovarian lactogen receptor sequence contains a unique cytoplasmic domain of 110 aa and consensus sequences for both a tyrosine phosphorylation site and an ATP/GTP type A binding site, and thus has potential for signal transduction and mitogenic activity. The 1.2 kb clone codes for a truncated binding form of 150 aa that is identical with the ovarian long form over only the first 130 residues, and lacks the transmembrane region. Differences between long and short forms of the ovarian lactogen receptors and the truncated liver species may result from alternative splicing. The prolactin holoreceptor gene(s) has the potential for producing several receptor subtypes that differ in tissue-specific expression, size, compartmentalization and mode of signal transduction, and may subserve the divergent functions of prolactin in its several target cells.
Biochemical and Biophysical Research Communications 05/1990; 168(2):415-22. · 2.48 Impact Factor
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ABSTRACT: The purpose of this study was to establish the distribution, speciation and bioavailability of mercury in mangrove sediments. A systemic survey of surficial sediments from 13 mangrove wetlands of China was carried out. Hg concentrations ranged from 2.3–903.6 ng g−1, with an average value of 189.4 ng g−1. Of the 13 areas surveyed, the Hg content in sediments was similar to background levels in 6 areas but was much higher in the other seven areas. Hg levels were affected by natural and anthropogenic factors, including terrestrial pollutants, geomorphic properties, and indirectly by economic status. Hg levels were positively correlated with organic matter, pH, and silt and clay fractions, but Hg was negatively correlated with sand fraction. In most mangrove wetlands, Hg existed primarily in the form of volatile Hg. Hg is easily bioaccumulated in mangrove wetlands and may be the natural source of Hg emissions to the atmosphere.
Marine Pollution Bulletin.
