Publications (14)11.56 Total impact
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Article: Text mining meets workflow: linking U-Compare with Taverna.
Bioinformatics. 01/2010; 26:2486-2487. -
Conference Proceeding: Imbalanced Classification Using Dictionary-based Prototypes and Hierarchical Decision Rules for Entity Sense Disambiguation.
COLING 2010, 23rd International Conference on Computational Linguistics, Posters Volume, 23-27 August 2010, Beijing, China; 01/2010 -
Conference Proceeding: U-Compare: An Integrated Language Resource Evaluation Platform Including a Comprehensive UIMA Resource Library.
Proceedings of the International Conference on Language Resources and Evaluation, LREC 2010, 17-23 May 2010, Valletta, Malta; 01/2010 -
Article: Disambiguating the species of biomedical named entities using natural language parsers.
Bioinformatics. 01/2010; 26:661-667. -
Conference Proceeding: A Japanese Particle Corpus Built by Example-Based Annotation.
Proceedings of the International Conference on Language Resources and Evaluation, LREC 2010, 17-23 May 2010, Valletta, Malta; 01/2010 -
Conference Proceeding: Fast Full Parsing by Linear-Chain Conditional Random Fields.
EACL 2009, 12th Conference of the European Chapter of the Association for Computational Linguistics, Proceedings of the Conference, March 30 - April3, 2009, Athens, Greece; 01/2009 -
Article: FACTA: a text search engine for finding associated biomedical concepts.
Bioinformatics. 01/2008; 24:2559-2560. -
Article: Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
Bioinformatics. 01/2007; 23:2768-2774. -
Article: Text mining and its potential applications in systems biology.
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ABSTRACT: With biomedical literature increasing at a rate of several thousand papers per week, it is impossible to keep abreast of all developments; therefore, automated means to manage the information overload are required. Text mining techniques, which involve the processes of information retrieval, information extraction and data mining, provide a means of solving this. By adding meaning to text, these techniques produce a more structured analysis of textual knowledge than simple word searches, and can provide powerful tools for the production and analysis of systems biology models.Trends in Biotechnology 01/2007; 24(12):571-9. · 9.15 Impact Factor -
Article: Thesaurus or Logical Ontology, Which One Do We Need for Text Mining?
Language Resources and Evaluation. 01/2005; 39:77-90. -
Article: Introduction: named entity recognition in biomedicine.
Journal of Biomedical Informatics. 01/2004; 37:393-395. -
Article: Terminology-driven literature mining and knowledge acquisition in biomedicine.
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ABSTRACT: In this paper we describe Tagged Information Management System (TIMS), an integrated knowledge management system for the domain of molecular biology and biomedicine, in which terminology-driven literature mining, knowledge acquisition (KA), knowledge integration (KI), and XML-based knowledge retrieval are combined using tag information management and ontology inference. The system integrates automatic terminology acquisition, term variation management, hierarchical term clustering, tag-based information extraction (IE), and ontology-based query expansion. TIMS supports introducing and combining different types of tags (linguistic and domain-specific, manual and automatic). Tag-based interval operations and a query language are introduced in order to facilitate KA and retrieval from XML documents. Through KA examples, we illustrate the way in which literature mining techniques can be utilised for knowledge discovery from documents.International Journal of Medical Informatics 01/2003; 67(1-3):33-48. · 2.41 Impact Factor -
Conference Proceeding: A Methodology for Terminology-based Knowledge Acquisition and Integration.
01/2002 -
Article: Terminology-driven literature mining and knowledge acquisition in biomedicine.
I. J. Medical Informatics. 01/2002; 67:33-48.
Top Journals
Institutions
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2004–2010
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The University of Tokyo
- Department of Computer Science
Tokyo, Tokyo-to, Japan
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2007–2009
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The University of Manchester
- School of Computer Science
Manchester, ENG, United Kingdom
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2003
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University of Salford
- School of Computing, Science and Engineering
Salford, ENG, United Kingdom
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