Article
Force spectroscopy of the double-tethered concanavalin-A mannose bond.
Chemistry and Materials Science, Lawrence Livermore National Laboratory, Livermore, California 94550, USA.
Biophysical Journal (impact factor:
3.65).
05/2004;
86(4):2430-7.
DOI:10.1016/S0006-3495(04)74299-X
pp.2430-7
Source: PubMed
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Citations (0)
- Cited In (2)
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Article: Molecule-level imaging of Pax6 mRNA distribution in mouse embryonic neocortex by molecular interaction force microscopy.
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ABSTRACT: Detection of the cellular and tissue distributions of RNA species is critical in our understanding of the regulatory mechanisms underlying cellular and tissue differentiation. Here, we show that an atomic force microscope tip modified with 27-acid dendron, a cone shaped molecule with 27 monomeric units forming its base, can be successfully used to map the spatial distribution of mouse Pax6 mRNA on sectioned tissues of the mouse embryonic neocortex. Scanning of the sectioned tissue with a 30-mer DNA probe attached to the apex of the dendron resulted in detection of the target mRNA on the tissue section, permitting mapping of the mRNA distribution at nanometer resolution. The unprecedented sensitivity and resolution of this process should be applicable to identification of molecular level distribution of various RNAs in a cell.Nucleic Acids Research 12/2008; 37(2):e10. · 8.03 Impact Factor -
Article: Interaction of an anticancer peptide fragment of azurin with p53 and its isolated domains studied by atomic force spectroscopy.
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ABSTRACT: p28 is a 28-amino acid peptide fragment of the cupredoxin azurin derived from Pseudomonas aeruginosa that preferentially penetrates cancerous cells and arrests their proliferation in vitro and in vivo. Its antitumor activity reportedly arises from post-translational stabilization of the tumor suppressor p53 normally downregulated by the binding of several ubiquitin ligases. This would require p28 to specifically bind to p53 to inhibit specific ligases from initiating proteosome-mediated degradation. In this study, atomic force spectroscopy, a nanotechnological approach, was used to investigate the interaction of p28 with full-length p53 and its isolated domains at the single molecule level. Analysis of the unbinding forces and the dissociation rate constant suggest that p28 forms a stable complex with the DNA-binding domain of p53, inhibiting the binding of ubiquitin ligases other than Mdm2 to reduce proteasomal degradation of p53.International Journal of Nanomedicine 01/2011; 6:3011-9. · 3.13 Impact Factor
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Keywords
angular effects
atomic force microscopy tip
commercially available polymer tethers
Computer simulations
interaction force
ligand
mass spectrometry
nonspecific binding events
polymer-tethered concanavalin-A protein
provides selective discrimination
rupture distributions
single functional molecule
single protein-sugar bond
single-molecule bond rupture force
single-tethered functional molecule
specific
tether length distribution
tether lengths
tethered mannose carbohydrate
tethering