Article
Temporal modulation of an autoprotease is crucial for replication and pathogenicity of an RNA virus.
Institut für Virologie (FB Veterinärmedizin), Justus-Liebig-Universität Giessen, Frankfurter Strasse 107, 35392 Giessen, Germany.
Journal of Virology (impact factor:
5.4).
11/2004;
78(19):10765-75.
DOI:10.1128/JVI.78.19.10765-10775.2004
pp.10765-75
Source: PubMed
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Article: A workbench for multiple alignment construction and analysis.
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ABSTRACT: Multiple sequence alignment can be a useful technique for studying molecular evolution, as well as for analyzing relationships between structure or function and primary sequence. We have developed for this purpose an interactive program, MACAW (Multiple Alignment Construction and Analysis Workbench), that allows the user to construct multiple alignments by locating, analyzing, editing, and combining "blocks" of aligned sequence segments. MACAW incorporates several novel features. (1) Regions of local similarity are located by a new search algorithm that avoids many of the limitations of previous techniques. (2) The statistical significance of blocks of similarity is evaluated using a recently developed mathematical theory. (3) Candidate blocks may be evaluated for potential inclusion in a multiple alignment using a variety of visualization tools. (4) A user interface permits each block to be edited by moving its boundaries or by eliminating particular segments, and blocks may be linked to form a composite multiple alignment. No completely automatic program is likely to deal effectively with all the complexities of the multiple alignment problem; by combining a powerful similarity search algorithm with flexible editing, analysis and display tools, MACAW allows the alignment strategy to be tailored to the problem at hand.Proteins Structure Function and Bioinformatics 02/1991; 9(3):180-90. · 3.39 Impact Factor -
Article: Anxiety, depression and sleep in male patients undergoing coronary artery bypass surgery.
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ABSTRACT: The aim of this study was to examine the prevalence of depression and anxiety following coronary artery bypass surgery (CABG) and to see how those patients with depression and anxiety differ in sleeping pattern. The individual reaction to sleep loss was tested as a predictor of certain emotional symptoms in the follow-up period. Thirty-eight males, between 45 and 68 years, were interviewed prior to, and 1 month after, surgery, and received a questionnaire at the 6-month follow-up. Eighty per cent scored moderate anxiety prior to surgery and six patients were depressed. An anxiety-prone individual reactivity persisted in the same patients in 38.9% (n = 14) following CABG, with significantly more sleep disturbances, firedness, energy deficits, immobility, and lower degree of quality of life (QoL). Sad/depressed mood or cognitive/behavioural fatigue symptoms as reactions to sleep loss were predictors of sleep problems and daytime sequelae, whereas a higher postoperative NYHA class was predicted by cognitive/behavioural fatigue and dysphoria reactions. Being less refreshed by sleep on final awakening prior to surgery related to 44.5% of the variance in QoL outcome 6 months following surgery. In conclusion, an anxiety-prone individual reactivity is significantly associated with sleep disturbances. Reactions to sleep loss prior to surgery are associated with emotional distress after surgery.Scandinavian Journal of Caring Sciences 02/1999; 13(2):137-43. · 0.89 Impact Factor
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Keywords
9 h postinfection
BVDV infection
cp BVDV
cp BVDV infection
cp BVDV-infected cells
crucial role
hepatitis C
identified cysteine protease
noncp BVDV
noncp BVDVs
NS2-3 autoprocessing
NS2-3 precursor
persistent infection
pestiviral RNA replication
positive polarity encoding
replicative NS3 protease/helicase
RNA replication control
single-stranded RNA
viral nonstructural protein 2
vital role