Article
Viral phenotype and fitness.
Department of Public Health, University Tor Vergata Rome, Italy.
The new microbiologica: official journal of the Italian Society for Medical, Odontoiatric, and Clinical Microbiology (SIMMOC) (impact factor:
1).
05/2004;
27(2 Suppl 1):71-6.
pp.71-6
Source: PubMed
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Citations (0)
- Cited In (2)
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Chapter: Nucleic Acid Testing for HIV-1 Diagnosis and Monitoring
01/2012; , ISBN: 978-953-307-871-7 -
Article: Rapid evolution of pandemic noroviruses of the GII.4 lineage.
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ABSTRACT: Over the last fifteen years there have been five pandemics of norovirus (NoV) associated gastroenteritis, and the period of stasis between each pandemic has been progressively shortening. NoV is classified into five genogroups, which can be further classified into 25 or more different human NoV genotypes; however, only one, genogroup II genotype 4 (GII.4), is associated with pandemics. Hence, GII.4 viruses have both a higher frequency in the host population and greater epidemiological fitness. The aim of this study was to investigate if the accuracy and rate of replication are contributing to the increased epidemiological fitness of the GII.4 strains. The replication and mutation rates were determined using in vitro RNA dependent RNA polymerase (RdRp) assays, and rates of evolution were determined by bioinformatics. GII.4 strains were compared to the second most reported genotype, recombinant GII.b/GII.3, the rarely detected GII.3 and GII.7 and as a control, hepatitis C virus (HCV). The predominant GII.4 strains had a higher mutation rate and rate of evolution compared to the less frequently detected GII.b, GII.3 and GII.7 strains. Furthermore, the GII.4 lineage had on average a 1.7-fold higher rate of evolution within the capsid sequence and a greater number of non-synonymous changes compared to other NoVs, supporting the theory that it is undergoing antigenic drift at a faster rate. Interestingly, the non-synonymous mutations for all three NoV genotypes were localised to common structural residues in the capsid, indicating that these sites are likely to be under immune selection. This study supports the hypothesis that the ability of the virus to generate genetic diversity is vital for viral fitness.PLoS Pathogens 01/2010; 6(3):e1000831. · 9.13 Impact Factor
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Keywords
antiretroviral therapy
antiretroviral treatment regimens
compensatory changes
current treatment guidelines advocate
disease progression
dramatic shifts
drug resistance mutations
drug-resistance mutations
ex vivo viral fitness
HIV research field
human immunodeficiency virus type 1
parameter defining
population size
primary drug resistant mutations
reduced fitness
replicative adaptation
replicative capacity
respective antiretrovirals
sustained CD4+T cell count
viral fitness