Article
White matter tractography by anisotropic wavefront evolution and diffusion tensor imaging.
Department of Diagnostic Radiology, Yale University, New Haven, CT 06520, USA.
Medical Image Analysis (impact factor:
4.42).
11/2005;
9(5):427-40.
DOI:10.1016/j.media.2005.05.008
pp.427-40
Source: PubMed
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Citations (0)
- Cited In (11)
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Article: Fuzzy anatomical connectedness of the brain using single and multiple fibre orientations estimated from diffusion MRI.
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ABSTRACT: A new fuzzy algorithm for assessing white matter connectivity in the brain using diffusion-weighted magnetic resonance images is presented. The proposed method considers anatomical paths as chains of linked neighbouring voxels. Links between neighbours are assigned weights using the respective fibre orientation estimates. By checking all possible paths between any two voxels, a connectedness value is assigned, representative of the weakest link of the strongest path connecting the voxel pair. Multiple orientations within a voxel can be incorporated, thus allowing the utilization of fibre crossing information, while fibre branching is inherently considered. Under the assumption that paths connected strongly to a seed will exhibit adequate orientational coherence, fuzzy connectedness values offer a relative measure of path feasibility. The algorithm is validated using simulations and results are shown on diffusion tensor and Q-ball images.Computerized medical imaging and graphics: the official journal of the Computerized Medical Imaging Society 09/2009; 34(6):504-13. · 1.04 Impact Factor -
Article: A graph-based approach for automatic cardiac tractography.
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ABSTRACT: A new automatic algorithm for assessing fiber-bundle organization in the human heart using diffusion-tensor magnetic resonance imaging is presented. The proposed approach distinguishes from the locally "greedy" paradigm, which uses voxel-wise seed initialization intrinsic to conventional tracking algorithms. It formulates the fiber tracking problem as the global problem of computing paths in a boolean-weighted undirected graph, where each voxel is a vertex and each pair of neighboring voxels is connected with an edge. This leads to a global optimization task that can be solved by iterated conditional modes-like algorithms or Metropolis-type annealing. A new deterministic optimization strategy, namely iterated conditional modes with α-relaxation using (t(2))- and (t(4))-moves, is also proposed; it has similar performance to annealing but offers a substantial computational gain. This approach offers some important benefits. The global nature of our tractography method reduces sensitivity to noise and modeling errors. The discrete framework allows an optimal balance between the density of fiber bundles and the amount of available data. Besides, seed points are no longer needed; fibers are predicted in one shot for the whole diffusion-tensor magnetic resonance imaging volume, in a completely automatic way.Magnetic Resonance in Medicine 10/2010; 64(4):1215-29. · 2.96 Impact Factor -
Article: CUDA-Accelerated Geodesic Ray-Tracing for Fiber Tracking.
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ABSTRACT: Diffusion Tensor Imaging (DTI) allows to noninvasively measure the diffusion of water in fibrous tissue. By reconstructing the fibers from DTI data using a fiber-tracking algorithm, we can deduce the structure of the tissue. In this paper, we outline an approach to accelerating such a fiber-tracking algorithm using a Graphics Processing Unit (GPU). This algorithm, which is based on the calculation of geodesics, has shown promising results for both synthetic and real data, but is limited in its applicability by its high computational requirements. We present a solution which uses the parallelism offered by modern GPUs, in combination with the CUDA platform by NVIDIA, to significantly reduce the execution time of the fiber-tracking algorithm. Compared to a multithreaded CPU implementation of the same algorithm, our GPU mapping achieves a speedup factor of up to 40 times.International Journal of Biomedical Imaging 01/2011; 2011:698908.
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Keywords
anisotropic wavefront propagation
correct arrival times
diffusion tensor ellipsoid
diffusion tensor images
Diffusion tensor imaging
functional network
normal human DTI brain images
oblate regions
obtained pathways
principal eigenvector
restricted diffusion
resulting partial differential equation
speed profile
static Hamilton-Jacobi equation
sweeping method
tissue components
tracing minimum-cost trajectories
water molecules
white matter
white matter tractography method