Article
Development of resistance to RNAi in mammalian cells.
HIV and AIDS Malignancy Branch, Center for Cancer Research, National Cancer Institute, National Institutes of Health, 10 Center Drive, Room 10S 255, Bethesda, MD 20892, USA.
Annals of the New York Academy of Sciences (impact factor:
3.15).
12/2005;
1058:105-18.
DOI:10.1196/annals.1359.019
pp.105-18
Source: PubMed
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Article: A novel effect of adenovirus VA RNA1 on cytoplasmic mRNA abundance.
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ABSTRACT: Adenovirus VA RNA1 is a small RNA polymerase III transcript that enhances mRNA translation both in transfected cells and during a lytic virus infection. Here we present evidence that VA RNA1 also, in length-dependent manner, increases cytoplasmic mRNA abundance in transient expression assays in 293 cells.Virology 03/1990; 174(2):613-7. · 3.35 Impact Factor -
Article: Activation of the protein kinase PKR by short double-stranded RNAs with single-stranded tails.
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ABSTRACT: The human RNA-activated protein kinase PKR is an interferon-induced protein that is part of the innate immune response and inhibits viral replication. The action of PKR involves RNA-dependent autophosphorylation leading to inhibition of translation. PKR has an N-terminal dsRNA-binding domain that can interact non-sequence specifically with long (>33 bp) stretches of dsRNA leading to activation. In addition, certain viral and cellular RNAs containing non-Watson-Crick structures and multiple, shorter dsRNA sections can regulate PKR. In an effort to identify novel binders and possible activators of PKR, we carried out selections on a partially structured dsRNA library using truncated and full-length versions of PKR. A library with 10(11) sequences was constructed and aptamers that bound to His6-tagged proteins were isolated. Characterization revealed a novel minimal RNA motif for activation of PKR with the following unified structural characteristics: a hairpin with a nonconserved imperfect 16-bp dsRNA stem flanked by 10-15-nt single-stranded tails, herein termed a "ss-dsRNA motif." Boundary experiments revealed that the single-stranded tails flanking the dsRNA core provide the critical determinant for activation. The ss-dsRNA motif occurs in a variety of cellular and viral RNAs, suggesting possible novel functions for PKR in nature.RNA 12/2004; 10(12):1934-45. · 5.09 Impact Factor
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Keywords
broad range
C. elegans
Cellular factors
cellular gene
detrimental effects
DNA viruses
editing-mediated RNAi resistance
encoding viral suppressors
first cellular factor
potent small-molecule inhibitors
potential therapeutic applications
powerful experimental tool
RNA interference
RNA viruses
RNAi machinery
RNAi silences genes
targeted region
Viral gene-specific siRNAs
viral suppressors
widespread natural phenomenon