Article
Cross- and axial-peak intensities in 2D-SLF experiments based on cross-polarization--the role of the initial density matrix.
Department of Physics, Indian Institute of Science, Bangalore 560012, India.
Journal of Magnetic Resonance (impact factor:
2.14).
05/2007;
185(2):308-17.
DOI:10.1016/j.jmr.2007.01.007
Source: PubMed
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Citations (0)
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Article: Glycines: role in α-helical membrane protein structures and a potential indicator of native conformation.
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ABSTRACT: Among the growing number of membrane protein structures in the Protein Data Bank, there are many transmembrane domains that appear to be native-like; at the same time, there are others that appear to have less than complete native-like character. Hence, there is an increasing need for validation tools that distinguish native-like from non-native-like structures. Membrane mimetics used in protein structural characterizations differ in numerous physicochemical properties from native membranes and provide many opportunities for introducing non-native-like features into membrane protein structures. One possible approach for validating membrane protein structures is based on the use of glycine residues in transmembrane domains. Here, we have reviewed the membrane protein structure database and identified a set of benchmark proteins that appear to be native-like. In these structures, conserved glycine residues rarely face the lipid interstices, and many of them participate in close helix-helix packing. Glycine-based validation allowed the identification of non-native-like features in several membrane proteins and also shows the potential for verifying the native-like character for numerous other membrane protein structures.Biochemistry 05/2012; 51(24):4779-89. · 3.42 Impact Factor
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Keywords
axial-peak intensities
density matrix
different nuclei
different samples
dipolar oscillations
direct calculations
EXE-CP
homonuclear dipolar coupling
Lee-Goldburg
new pulse sequence
oriented liquid crystalline sample
PI-CP
polarization inversion
pulse sequences
relative ratio
simple
Simulations
standard CP experiment
standard CP pulse sequence
useful pulse sequences