Article

Purification, crystallization and preliminary structural characterization of the periplasmic domain P1 of the Escherichia coli membrane-protein insertase YidC.

Biochemie-Zentrum der Universität Heidelberg (BZH), INF 328, D-69120 Heidelberg, Germany.
Acta Crystallographica Section F Structural Biology and Crystallization Communications (impact factor: 0.51). 03/2008; 64(Pt 2):144-8. DOI:10.1107/S1744309108002364
Source: PubMed

ABSTRACT In Escherichia coli, the biogenesis of inner membrane proteins (IMPs) requires targeting and insertion factors such as the signal recognition particle (SRP) and the Sec translocon. Recent studies have identified YidC as a novel and essential component involved in membrane insertion of IMPs both in conjunction with the Sec translocon and as a separate entity. E. coli YidC is a member of the YidC (in bacteria)/Oxa1 (in mitochondria)/Alb3 (in chloroplasts) protein family and contains six transmembrane segments and a very large periplasmic domain P1. The overproduction, purification, crystallization and preliminary crystallographic studies of the native and selenomethionine-labelled P1 domain are reported here as a first step towards the elucidation of the molecular mechanism of YidC as a membrane-protein insertase.

0 0
 · 
0 Bookmarks
 · 
17 Views
  • Article: Biogenesis of inner membrane proteins in Escherichia coli.
    [show abstract] [hide abstract]
    ABSTRACT: Gram-negative bacteria such as Escherichia coli are surrounded by two membranes, the inner membrane and the outer membrane. The biogenesis of most inner membrane proteins (IMPs), typical alpha-helical proteins, appears to follow a partly conserved cotranslational pathway. Targeting involves a relatively simple signal recognition particle (SRP) and SRP-receptor. Insertion of most IMPs into the membrane occurs via the Sec-translocon, which is also used for the vectorial transport of secretory proteins. Similar to eukaryotic systems, little is known about the later stages of biogenesis of IMPs, the folding and assembly in the lipid bilayer. Recently, YidC has been identified as a factor that assists in the integration, folding, and assembly of IMPs both in association with the Sec-translocon and separately. This review deals mainly with recent structural and biochemical data from various experimental systems that offer new insight into the different stages of biogenesis of E. coli IMPs.
    Annual Review of Microbiology 02/2005; 59:329-55. · 14.35 Impact Factor
  • Article: Sec-translocase mediated membrane protein biogenesis.
    [show abstract] [hide abstract]
    ABSTRACT: Alpha-helical transmembrane proteins in bacteria are localized within the plasma membrane. The membrane assembly of these proteins requires protein devices for insertion into the lipid bilayer. In E. coli, membrane proteins require the SRP pathway components Ffh, 4.5S RNA and FtsY for membrane targeting and the SecYEGDF translocase and, in some cases, SecA, for translocation of hydrophilic domains. In addition, YidC, a recently discovered membrane protein, mediates the membrane integration and folding of hydrophobic domains of membrane proteins. In this review, we will describe the current status of the protein targeting and membrane integration pathways.
    Biochimica et Biophysica Acta 12/2004; 1694(1-3):37-53. · 4.66 Impact Factor
  • Source
    Article: Three-dimensional structure of the bacterial protein-translocation complex SecYEG.
    [show abstract] [hide abstract]
    ABSTRACT: Transport and membrane integration of polypeptides is carried out by specific protein complexes in the membranes of all living cells. The Sec transport path provides an essential and ubiquitous route for protein translocation. In the bacterial cytoplasmic membrane, the channel is formed by oligomers of a heterotrimeric membrane protein complex consisting of subunits SecY, SecE and SecG. In the endoplasmic reticulum membrane, the channel is formed from the related Sec61 complex. Here we report the structure of the Escherichia coli SecYEG assembly at an in-plane resolution of 8 A. The three-dimensional map, calculated from two-dimensional SecYEG crystals, reveals a sandwich of two membranes interacting through the extensive cytoplasmic domains. Each membrane is composed of dimers of SecYEG. The monomeric complex contains 15 transmembrane helices. In the centre of the dimer we observe a 16 x 25 A cavity closed on the periplasmic side by two highly tilted transmembrane helices. This may represent the closed state of the protein-conducting channel.
    Nature 09/2002; 418(6898):662-5. · 36.28 Impact Factor

Keywords

elucidation
 
Escherichia coli
 
essential component
 
first step
 
insertion factors
 
large periplasmic domain P1
 
membrane insertion
 
mitochondria)/Alb3
 
molecular mechanism
 
native
 
purification
 
Recent studies
 
Sec translocon
 
separate entity
 
signal recognition particle
 
transmembrane segments