Comparative evaluation of ATB Fungus 2 and Sensititre YeastOne panels for testing in vitro Candida antifungal susceptibility.
ABSTRACT ATB Fungus 2 and SensititreYeastOne are commercial methods for antifungal susceptibility testing of yeasts. The agreement between these two methods was assessed with a total of 133 Candida strains (60 Candida albicans, 18 Candida dubliniensis, 29 Candida glabrata, and 26 Candida krusei). MIC endpoints were established after 24 h of incubation at 36-/+1 degrees C by each method. Intra-laboratory reproducibility of both methods was excellent (=or>99%). Overall agreement between ATB Fungus 2 and Sensititre YeastOne 3 MICs (within 2 dilutions) was 91.2-97.7% for amphotericin B, 5-fluorocytosine and itraconazole, and 82.7% for fluconazole. The categorical agreement when ATB Fungus 2 results were compared to those by SensititreYeastOne 3 was 93.2-98.5% for 5-fluorocytosine and amphotericin B, but lower for the triazoles (72.9-75.9%). This easy to perform method could be an alternative for routine use in the clinical microbiology laboratory for susceptibility testing of common Candida spp.
- SourceAvailable from: Pedro Miguel Abrantes
Conference Paper: HIV/Candida co-infection in Sub-Saharan African women on ART[Show abstract] [Hide abstract]
ABSTRACT: Introduction: Sub-Saharan Africa has 23.5 million cases of HIV and is home to 92% of the world’s HIV-positive pregnant women of whom 24% die of pregnancy related complications. Oral candidiasis is a common condition in HIV-AIDS patients, caused by commensal yeasts which may colonise the mucous membranes of the mouth causing morbidity due to several factors including immunosuppression, smoking, poor nutrition and the use of antibiotics. Methods: One hundred and ninety-four South African and Cameroonian HIV-positive women participated in the study. Only subjects who had white pseudomembranous plaque on the tongue or visible oral candidiasis were included. Samples were collected by scraping the patient’s oral mucosa and tongue with a sterile swab. Candida species were differentiated using selective and chromogenic media and their susceptibility to antifungal drugs was tested using the TREK Sensititre system. Results and conclusion: One hundred and ninety-six isolates, representative of six Candida species were identified. C. albicans was the predominating species, with C. glabrata and C. dubliniensis being the more frequent of the non-albicans isolates. Azole drug resistance patterns were very high for C. albicans, while C. glabrata showed high resistance patterns to echinocandins drugs. The duration of ART could be associated with the presence of different Candida species but no concrete conclusions could be drawn concerning HIV/Candida co-infection when controlling for other risk factors such as HIV stage, pregnancy, age and treatment for tuberculosis. This may be a cause for concern, particularly in the case of pregnancy, where co-infection may pose a risk for maternal morbidity and mortality.Federation of Infectious Diseases Societies of Southern Africa 5th Congress, Winterton, South Africa; 10/2013
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ABSTRACT: Candida species are a common cause of infection in immune-compromised HIV-positive individuals, who are usually treated with the antifungal drug, fluconazole in public hospitals in Africa. However, information about the prevalence of drug resistance to fluconazole and other antifungal agents on Candida species is very limited. This study examined 128 Candida isolates from South Africa and 126 Cameroonian Candida isolates for determination of species prevalence and antifungal drug susceptibility. The isolates were characterized by growth on chromogenic and selective media and by their susceptibility to nine antifungal drugs tested using the TREK™ YeastOne9 drug panel (Thermo Scientific). Eighty three percent (82.8%) of South African isolates were C. albicans (106 isolates), 9.4% were C. glabrata (12 isolates) and 7.8% were C. dubliniensis (10 isolates). Of the Cameroonian isolates, 73.02% were C. albicans (92 isolates); 19.05% C. glabrata (24 isolates); 3.2% C. tropicalis (4 isolates); 2.4% C. krusei (3 isolates); 1.59% either C. kefyr, C. parapsilopsis or C. lusitaneae (2 isolates); and 0.79% C. dubliniensis (1 isolate). Widespread C. albicans resistance to azoles was detected phenotypically in both populations. Differences in drug resistance were seen within C. glabrata found in both populations. Echinocandin drugs were more effective on isolates obtained from the Cameroon than in South Africa. A multiple drug resistant (MDR) C. dubliniensis strain isolated from the South African samples was inhibited only by 5-flucytosine in vitro on the YO9 panel. Drug resistance among oral Candida species is common among African HIV patients in these two countries. Regional surveillance of Candida species drug susceptibility should be undertaken to ensure effective treatment for HIV-positive patients. The final author submission can be accessed without copyright infringement on: http://repository.uwc.ac.za/xmlui/handle/10566/1082Diagnostic Microbiology and Infectious Disease 06/2014; 79:222-27. · 2.57 Impact Factor
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ABSTRACT: The rapid development in the clinical microbiology diagnostic assays presents more challenges for developing countries than for the developed world, especially in the area of test validation before the introduction of new tests. Here we report on the misleading high MICs of Candida spp. to azoles using the ATB FUNGUS 3 (bioMérieux, La Balme-les Grottes, France) with automated readings in China to highlight the dangers of introducing a diagnostic assay without validation. ATB FUNGUS 3 is the most commonly used commercial antifungal susceptibility testing method in China. An in-depth analysis of data showed higher levels of resistance to azoles when ATB FUNGUS 3 strips were read automatically than when read visually. Based on this finding, the performance of ATB FUNGUS 3, read both visually and automatically, was evaluated by testing 218 isolates of five clinically important Candida species, using broth microdilution (BMD) following CLSI M27-A3 as the gold-standard. The overall essential agreement (EA) between ATB visual readings and BMD was 99.1%. In contrast, the ATB automated readings showed higher discrepancies with BMD, with overall EA of 86.2%, and specifically lower EA was observed for fluconazole (80.7%), voriconazole (77.5%), and itraconazole (73.4%), which was most likely due to the trailing effect of azoles. The major errors in azole drug susceptibilities by ATB automated readings is a concern in China that can result in misleading clinical antifungal drug selection and pseudo high rates of antifungal resistance. Therefore, the ATB visual reading is generally recommended. In the meantime, we propose a practical algorithm to be followed for ATB FUNGUS 3 antifungal susceptibility for Candida spp. before the improvement in the automated reading system.PLoS ONE 12/2014; 9(12):e114004. · 3.53 Impact Factor
Rev Iberoam Micol 2008; 25: 3-6
Comparative evaluation of ATB
Fungus 2 and Sensititre YeastOne
panels for testing in vitro Candida
Elena Eraso1, Maite Ruesga1, María Villar-Vidal1,
Alfonso Javier Carrillo-Muñoz2, Ana Espinel-Ingroff3and
1Laboratorio de Micología Médica, Departamento de Inmunología, Microbiología y Parasitología, Facultad de
Medicina y Odontología, Universidad del País Vasco, Apartado 699, E-48080 Bilbao, Spain; 2Departamento de
Microbiología, ACIA, P.O. Box 10178, E-08010 Barcelona, Spain; 3Virginia Commonwealth University Medical
Center, 1101 E. Marshall Street, Sanger Hall, Room 7-049, P.O. Box 980049, Richmond, VA 23298-0049, USA
ATB Fungus 2 and SensititreYeastOne are commercial methods for antifungal
susceptibility testing of yeasts. The agreement between these two methods
was assessed with a total of 133 Candida strains (60 Candida albicans,
18 Candida dubliniensis, 29 Candida glabrata, and 26 Candida krusei).
MIC endpoints were established after 24 h of incubation at 36 ± 1 ºC by each
method. Intra-laboratory reproducibility of both methods was excellent
(? 99%). Overall agreement between ATB Fungus 2 and Sensititre YeastOne 3
MICs (within 2 dilutions) was 91.2-97.7% for amphotericin B, 5-fluorocytosine
and itraconazole, and 82.7% for fluconazole. The categorical agreement when
ATB Fungus 2 results were compared to those by SensititreYeastOne 3 was
93.2-98.5% for 5-fluorocytosine and amphotericin B, but lower for the triazoles
(72.9-75.9%). This easy to perform method could be an alternative for routine
use in the clinical microbiology laboratory for susceptibility testing of common
ATB Fungus 2, Sensititre YeastOne, In vitro antifungal susceptibility, Candida
Evaluación comparativa de ATB Fungus 2 y
Sensititre YeastOne en el estudio de la sensibilidad in
vitro de Candida a los antifúngicos
ATB Fungus 2 y SensititreYeastOne son métodos comerciales para el estudio
de la sensibilidad in vitro de levaduras a los antifúngicos. La concordancia
entre estos dos métodos fue evaluada con un total de 133 aislamientos de
Candida (60 Candida albicans, 18 Candida dubliniensis, 29 Candida glabrata y
26 Candida krusei). La lectura de las CMIs se realizó para cada método
después de 24 h de incubación a 36 ± 1 ºC. La reproducibilidad
intralaboratorio de ambos métodos fue excelente (? 99%). La concordancia
global entre las CMIs de ATB Fungus 2 y Sensititre YeastOne 3 (en un rango
± 2 diluciones) fue de 91,2-97,7% para anfotericina B, 5-fluorocitosina e
itraconazol, y 82,7% para fluconazol. La concordancia por categorías cuando
los resultados de ATB Fungus 2 fueron comparados con los de
SensititreYeastOne 3 fue de 93,2-98,5% para 5-fluorocitosina y anfotericina B,
pero más baja para los triazoles (72,9-75,9%). Este método sencillo de realizar
puede ser una alternativa para uso de rutina en el laboratorio de microbiología
clínica en el estudio de la sensibilidad de Candida spp.
ATB Fungus 2, Sensititre YeastOne, Sensibilidad in vitro a los antifúngicos,
Dr. Guillermo Quindós
Laboratorio de Micología médica
Departamento de Inmunología, Microbiología y Parasitología
Facultad de Medicina y Odontología, Universidad del País Vasco
E-48080 Bilbao, Spain
Tel.: +34 946012854
©2008 Revista Iberoamericana de Micología
Apdo. 699, E-48080 Bilbao (Spain)
Candida albicans is the most commonly species
isolated from patients with candidiasis. Other species such
as Candida glabrata, Candida parapsilosis, Candida kru-
sei, or Candida dubliniensis are being frequently isolated
from immunocompromised or surgically treated patients.
A high variability in the susceptibility of clinical isolates
to antifungal agents has been reported among these Can-
dida spp. [7,8,10,16], emphasizing the importance of per-
forming species identification and antifungal susceptibility
In 2002, the Clinical and Laboratory Standards Ins-
titute (CLSI, formerly NCCLS) and the European Commit-
tee on Antibiotic Susceptibility (EUCAST) proposed two
broth dilution reference methods [2,4,9] for antifungal sus-
ceptibility testing of yeasts of clinical importance, but these
standardized methods are time-consuming and cumber-
some for routine use in the clinical laboratory. However, in
recent years, a number of commercial methods have been
introduced as easy-to-use, rapid alternatives [2,3,5,14,15].
One of these commercial method is the ATB Fungus 2,
which allows the determination of the susceptibility of
Candida spp. and Cryptococcus neoformans to antifungal
agents in a semi-solid medium under conditions similar to
those described in both EUCAST and CLSI reference
The aim of this study was to evaluate the performan-
ce of the ATB Fungus 2 panel (bioMérieux, Marcy l’Étoile,
France) in comparison to the Sensititre YeastOne 3 (Trek
Diagnostic Systems, East Grinstead, UK) for the in vitro
antifungal susceptibility testing of clinically important
Materials and Methods
Yeast isolates. We tested eight reference strains
(C. albicans, ATCC 76615, ATCC 90028, ATCC 90029,
and NCPF 3153; C. dubliniensis, NCPF 3949, and CECT
11473; and C. glabrata, ATCC 90030, and NCPF 3240)
and 125 clinical isolates including 56 C. albicans, 16 C. du-
bliniensis, 27 C. glabrata, and 26 C. krusei; susceptible (S),
susceptible dose dependent (SDD), intermediate (I) and or
resistant (R) isolates to the antifungal agents evaluated
were included in the set. The isolates were identified by
conventional mycological methods such as, the germ tube
induction test in serum, microscopical morphology and
chlamydospore formation in corn meal agar with Tween
80, and carbon source assimilation by the API ID 32C
(bioMérieux) . CLSI QC isolates C. krusei ATCC 6258
and C. parapsilosis ATCC 22019 were used as control
isolates. Prior to testing, each strain was subcultured for
24-48 h at 36 ± 1 ºC on Sabouraud glucose agar (Difco,
St. Louis, MO) and Candida ID2 (bioMérieux) to ensure
viability and purity.
Susceptibility testing. The antifungal susceptibility
of the study and QC isolates was evaluated by both ATB
Fungus 2 (bioMérieux) and Sensititre YeastOne 3 (Trek
Diagnostic Systems) methods. MIC endpoints of each iso-
late were determined after 24 h of incubation at 36 ± 1 ºC
by both methods.
The ATB Fungus 2 panel (bioMérieux) consists of
16 pairs of wells. The first pair does not contain any anti-
fungal agent and is used as growth control. The next 15
pairs contain four antifungal agents at the following drug
concentrations: 5-fluorocytosine 0.5-64 µg/ml, amphoteri-
cin B 0.5-16 µg/ml, fluconazole 0.25-128 µg/ml, and itra-
conazole 0.125-4 µg/ml. The ATB Fungus 2 panel was eva-
luated by following the manufacturer’s instructions [2,15].
Briefly, 20 µl of a 2 McFarland standard yeast suspension
was added to the specific growth medium (ATB Fungus 2
medium). After the homogenization step, each well was
inoculated with 135 µl of the homogenized inoculum.
Following 24h of incubation at 36 ± 1 ºC, growth in the
strips was read visually by two independent readers.
According to the manufacturer’s instructions, the amphote-
ricin B MIC corresponded to the lowest concentration ena-
bling complete growth inhibition. A certain amount of trai-
ling growth was disregarded for fluconazole, itraconazole
and 5-fluorocytosine and the MICs were the lowest drug
concentrations that showed a prominent reduction in
Sensititre YeastOne 3 (Trek Diagnostic Systems)
contains several antifungal drugs, but only the four present
in the ATB Fungus 2 strip were evaluated at the following
drug concentrations: 5-fluorocytosine 0.03-64 µg/ml, am-
photericin B 0.008-16 µg/ml, fluconazole 0.125-256 µg/ml,
and itraconazole 0.008-16 µg/ml. The Sensititre YeastOne
3 antifungal panel was also evaluated according to the
manufacturer’s instructions. Briefly, 20 µl of a 0.5 McFar-
land standard yeast suspension was transferred into 11 ml
of the RPMI broth tube and each well of the panel was
inoculated with 100 µl of the diluted inoculum. The plates
were visually read after 24 h of incubation at 36 ± 1 ºC.
Growth in each well was indicated by a color change from
blue (no growth) to red (growth). For amphotericin B, the
MIC corresponded to the lowest concentration enabling
complete growth inhibition (first blue well). For the other
agents, the MIC was defined as the lowest drug concentra-
tion preventing the development of the red color (or first
blue or purple well) corresponding to a significant inhibi-
tion of fungal growth.
Data analysis. Both on-scale and off-scale MICs by
each method were included in the analysis. The evaluation
of the reproducibility was based on the comparison of
MICs of each antifungal agent obtained for each strain and
by each method, as well as both types of reading by the
ATB Fungus 2 panel. MICs were considered in agreement
when the values were within no more than 2 dilutions. The
performance of the ATB Fungus 2 panel in identifying
resistant isolates was evaluated by determining the catego-
rical agreement between the two methods by using CLSI
M27-A2 MIC breakpoint categories [4-6,8-10]. A strain
was considered -R- to 5-fluorocytosine, fluconazole, and
itraconazole, if the MICs were ? 32, ? 64 and ? 1 µg/ml,
respectively; -SDD- or -I- (only for 5-fluorocytosine) if the
MICs were between 8-16, 16-32, and 0.25-0.5 µg/ml,
respectively; and -S-, if the MICs were ? 4, ? 8 and
? 0.12 µg/ml, respectively. Breakpoints are not available
for amphotericin B against any fungal species; however,
based on serum concentrations, an isolate was considered
-R- if the MIC was ? 1 µg/ml and -S- if the MIC was
< 1 µg/ml. Discrepancies of MIC endpoints between the
two methods were considered major errors when the iso-
late was R by the ATB Fungus 2 but -S- by the Sensititre
YeastOne 3, while minor errors were identified when there
were categorical shifts between -S- and -SDD- or between
R and -SDD-. Very major errors were identified when the
ATB Fungus 2 categorized an isolate as -S- and the Sensi-
titre YeastOne 3 as -R-.
Results and Discussion
Different ready-to-use kits have been commerciali-
zed for antifungal susceptibility testing of clinically impor-
tant yeasts [5,6,14]. The ATB Fungus 2 panel is an impro-
ved version of the original panel, because it includes
fluconazole and itraconazole, two of the most widely used
Rev Iberoam Micol 2008; 25: 3-6
antifungal drugs in therapy. Although both ATB Fungus 2
and Sensititre YeastOne 3 have demonstrated good to exce-
llent agreements with the CLSI M27 method in different
studies [2,5,13,15], limited data are available regarding the
agreement of results obtained by these methods. Because
of that we have evaluated the reproducibility of MICs
results obtained by both methods.
In the present study, MIC readings for the two QC
strains were within the reference limits described in the
CLSI M27-A2 document  and in the guides for both
commercial methods. Replicate testing of the QC strains
also demonstrated excellent agreement between both
methods with each antifungal agent (? 99%). The repro-
ducibility of MIC results for 8 of the 133 study strains that
were tested in triplicate in each sequential test was exce-
llent by each method (? 99% global reproducibility). The
agreement (no more than two dilutions) of MIC results
obtained by ATB Fungus 2 and Sensititre YeastOne 3 for
the 133 strains was good to excellent (91.7-97.7%) for
three of the four agents (Table). The agreement was lower
for fluconazole (82.7%).
The categorical agreement was good to excellent
(93.2 to 98.5%) with 5-fluorocytosine and amphoteri-
cin B, but lower with both triazoles (72.9-75.9%) (Table).
Although the majority of discrepant results were due to
minor errors, the categorical evaluation indicated that the
ATB Fungus 2 failed to identify 3 of the 12 itraconazole
and 4 of the 21 fluconazole resistant isolates; no very
major errors were observed with amphotericin B. Most
minor errors were also due to higher fluconazole and itra-
conazole MIC results by Sensititre YeastOne 3 than by the
ATB Fungus 2 (18 and 11 fluconazole and itraconazole
7% with 5-fluorocytosine. In two recent reports [2,15], the
comparison between CLSI or EUCAST reference methods
with either Sensititre YeastOne 3 or ATB Fungus 2 have
demonstrated excellent agreement (> 90%) between these
methods for all antifungal agents tested, except for itraco-
The present study mirrors these results for ampho-
tericin B and 5-fluorocytosine, but in contrast the agree-
ment was lower with fluconazole (82.7%) and higher with
itraconazole (91.7%) (Table).
In summary, ATB Fungus 2 is a simple, effective
and reproducible method and may be a valuable alternative
for testing the antifungal activity of 5-fluorocytosine and
amphotericin B against commonly isolated Candida spp.
The results were less favorable for testing fluconazole and
itraconazole due the false susceptible results for 3 of the 6
fluconazole -R- and 3 of the 12 itraconazole -R- isolates.
Further comparisons with one of the two reference
methods (CLSI or EUCAST) should clarify this issue
since false-susceptible (very major errors) have been
reported when the CLSI method has been compared to the
Sensititre YeastOne when testing fluconazole .
The authors were financed in part with grants
PI030662, and PI061895 from Fondo de Investigación
Sanitaria and and IT-222-07 from Gobierno Vasco-
Eusko Jaurlaritza. We are grateful to Ignacio
Urrechaga and José Manuel Torres, from bioMérieux
España, for the donation of the ATB Fungus 2 panels
used in this study.
ATB Fungus 2 for in vitro Candida antifungal susceptibility
Eraso E, et al.
Table. Essential agreement between ATB Fungus 2 and Sensititre
Very major errors
5FC= 5-fluorocytosine, AMB= amphotericin B, FLC= fluconazole, and ITC= itraconazole.
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