A Genome-Wide Screen for Interactions Reveals a New Locus on 4p15 Modifying the Effect of Waist-to-Hip Ratio on Total Cholesterol

Institute for Molecular Medicine Finland (FIMM), University of Helsinki, Helsinki, Finland.
PLoS Genetics (Impact Factor: 7.53). 10/2011; 7(10):e1002333. DOI: 10.1371/journal.pgen.1002333
Source: PubMed


Recent genome-wide association (GWA) studies described 95 loci controlling serum lipid levels. These common variants explain ∼25% of the heritability of the phenotypes. To date, no unbiased screen for gene-environment interactions for circulating lipids has been reported. We screened for variants that modify the relationship between known epidemiological risk factors and circulating lipid levels in a meta-analysis of genome-wide association (GWA) data from 18 population-based cohorts with European ancestry (maximum N = 32,225). We collected 8 further cohorts (N = 17,102) for replication, and rs6448771 on 4p15 demonstrated genome-wide significant interaction with waist-to-hip-ratio (WHR) on total cholesterol (TC) with a combined P-value of 4.79×10(-9). There were two potential candidate genes in the region, PCDH7 and CCKAR, with differential expression levels for rs6448771 genotypes in adipose tissue. The effect of WHR on TC was strongest for individuals carrying two copies of G allele, for whom a one standard deviation (sd) difference in WHR corresponds to 0.19 sd difference in TC concentration, while for A allele homozygous the difference was 0.12 sd. Our findings may open up possibilities for targeted intervention strategies for people characterized by specific genomic profiles. However, more refined measures of both body-fat distribution and metabolic measures are needed to understand how their joint dynamics are modified by the newly found locus.

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Available from: Theodore Papamarkou, Oct 04, 2015
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    • "This makes it difficult to find loci interacting with specified environmental factors. Recently published screen for G × E interactions identified a locus where, depending on the genotype at that locus, the connection between waist-to-hip ratio and total cholesterol differed (Surakka et al., 2011), but to detect the association, over 40,000 individuals from various population cohorts were used. "
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