Article

Small molecule inhibition of RISC loading.

Department of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania 19104, United States.
ACS Chemical Biology (impact factor: 6.45). 02/2012; 7(2):403-10. DOI:10.1021/cb200253h pp.403-10
Source: PubMed

ABSTRACT Argonaute proteins are the core components of the microRNP/RISC. The biogenesis and function of microRNAs and endo- and exo- siRNAs are regulated by Ago2, an Argonaute protein with RNA binding and nuclease activities. Currently, there are no in vitro assays suitable for large-scale screening of microRNP/RISC loading modulators. We describe a novel in vitro assay that is based on fluorescence polarization of TAMRA-labeled RNAs loaded to human Ago2. Using this assay, we identified potent small-molecule inhibitors of RISC loading, including aurintricarboxylic acid (IC(50) = 0.47 μM), suramin (IC(50) = 0.69 μM), and oxidopamine HCL (IC(50) = 1.61 μM). Small molecules identified by this biochemical screening assay also inhibited siRNA loading to endogenous Ago2 in cultured cells.

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Keywords

Argonaute protein
 
Argonaute proteins
 
assay
 
biochemical screening assay
 
core components
 
cultured cells
 
large-scale screening
 
microRNP/RISC loading modulators
 
nuclease activities
 
oxidopamine HCL
 
potent small-molecule inhibitors
 
RISC loading
 
RNA binding
 
Small molecules
 
TAMRA-labeled RNAs
 
vitro assay
 
vitro assays suitable