Article

Structural and enzymatic characterization of the streptococcal ATP/diadenosine polyphosphate and phosphodiester hydrolase Spr1479/SapH.

Hefei National Laboratory for Physical Sciences at the Microscale and School of Life Sciences, University of Science and Technology of China, Hefei, Anhui 230026, China.
Journal of Biological Chemistry (impact factor: 4.77). 08/2011; 286(41):35906-14. DOI:10.1074/jbc.M111.228585 pp.35906-14
Source: PubMed

ABSTRACT Spr1479 from Streptococcus pneumoniae R6 is a 33-kDa hypothetical protein of unknown function. Here, we determined the crystal structures of its apo-form at 1.90 Å and complex forms with inorganic phosphate and AMP at 2.30 and 2.20 Å, respectively. The core structure of Spr1479 adopts a four-layer αββα-sandwich fold, with Fe(3+) and Mn(2+) coordinated at the binuclear center of the active site (similar to metallophosphoesterases). Enzymatic assays showed that, in addition to phosphodiesterase activity for bis(p-nitrophenyl) phosphate, Spr1479 has hydrolase activity for diadenosine polyphosphate (Ap(n)A) and ATP. Residues that coordinate with the two metals are indispensable for both activities. By contrast, the streptococcus-specific residue Trp-67, which binds to phosphate in the two complex structures, is indispensable for the ATP/Ap(n)A hydrolase activity only. Moreover, the AMP-binding pocket is conserved exclusively in all streptococci. Therefore, we named the protein SapH for streptococcal ATP/Ap(n)A and phosphodiester hydrolase.

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Keywords

33-kDa hypothetical protein
 
active site
 
apo-form
 
ATP/Ap(n)A hydrolase activity
 
bis(p-nitrophenyl)
 
complex forms
 
diadenosine polyphosphate
 
four-layer αββα-sandwich
 
indispensable
 
phosphodiester hydrolase
 
phosphodiesterase activity
 
protein SapH
 
Residues
 
streptococcal ATP/Ap(n)A
 
Streptococcus pneumoniae R6
 
streptococcus-specific residue Trp-67
 
two complex structures
 
two metals
 

Yong-Liang Jiang