Article
Changes in the plasma proteome follows chronic opiate administration in simian immunodeficiency virus infected rhesus macaques.
Department of Pharmacology and Experimental Neuroscience, University of Nebraska Medical Center, 985800 Nebraska Medical Center, Omaha, NE 68198-5880, USA.
Drug and alcohol dependence (impact factor:
3.6).
08/2011;
120(1-3):105-12.
DOI:10.1016/j.drugalcdep.2011.07.009
pp.105-12
Source: PubMed
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Article: Plasma proteomic analysis of simian immunodeficiency virus infection of rhesus macaques.
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ABSTRACT: Lentiviral replication in its target cells affects a delicate balance between cellular cofactors required for virus propagation and immunoregulation for host defense. To better elucidate cellular proteins linked to viral infection, we tested plasma from rhesus macaques infected with the simian immunodeficiency viral strain SIVsmm9, prior to, 10 days (acute), and 49 weeks (chronic) after viral infection. Changes in plasma protein content were measured by quantitative mass spectrometry by isobaric tags for absolute and relative quantitation (iTRAQ) methods. An 81 and 232% increase in SERPINA1 was seen during acute and chronic infection, respectively. Interestingly, gelsolin, vitamin D binding protein and histidine rich glycoprotein were decreased by 45% in acute conditions but returned to baseline during chronic infection. When compared to uninfected controls, a 48-103% increase in leucine rich alpha 2-glycoprotein, vitronectin, and ceruloplasmin was observed during chronic viral infection. Observed changes in plasma proteins expression likely represent a compensatory host response to persistent viral infection.Journal of Proteome Research 09/2010; 9(9):4721-31. · 5.11 Impact Factor -
Article: Statistical design of quantitative mass spectrometry-based proteomic experiments.
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ABSTRACT: We review the fundamental principles of statistical experimental design, and their application to quantitative mass spectrometry-based proteomics. We focus on class comparison using Analysis of Variance (ANOVA), and discuss how randomization, replication and blocking help avoid systematic biases due to the experimental procedure, and help optimize our ability to detect true quantitative changes between groups. We also discuss the issues of pooling multiple biological specimens for a single mass analysis, and calculation of the number of replicates in a future study. When applicable, we emphasize the parallels between designing quantitative proteomic experiments and experiments with gene expression microarrays, and give examples from that area of research. We illustrate the discussion using theoretical considerations, and using real-data examples of profiling of disease.Journal of Proteome Research 03/2009; 8(5):2144-56. · 5.11 Impact Factor
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Keywords
7 weeks
absolute quantitation labeling
complex cell-to-cell interactions operative
continuous opiate administrations
drug abuse
Indian-strain rhesus monkeys
isobaric tags
lentiviral infection
opiate administration
opiates induce broad
plasma protein content
plasma proteome
plasma proteomic profiling
protein alterations
SIV infection
SIV-infected monkeys
SIV-infected monkeys likely
substantive changes
Substantive plasma proteomic changes
viral infection