Is rigorous retrospective harmonization possible? Application of the DataSHaPER approach across 53 large studies

Research Institute - McGill University Health Centre, Montreal, Quebec, Canada.
International Journal of Epidemiology (Impact Factor: 9.2). 07/2011; 40(5):1314-28. DOI: 10.1093/ije/dyr106
Source: PubMed

ABSTRACT Methods This article examines the value of using the DataSHaPER for retrospective harmonization of established studies. Using the DataSHaPER approach, the potential to generate 148 harmonized variables from the questionnaires and physical measures collected in 53 large population-based studies (6.9 million participants) was assessed. Variable and study characteristics that might influence the potential for data synthesis were also explored. Results Out of all assessment items evaluated (148 variables for each of the 53 studies), 38% could be harmonized. Certain characteristics of variables (i.e. relative importance, individual targeted, reference period) and of studies (i.e. observational units, data collection start date and mode of questionnaire administration) were associated with the potential for harmonization. For example, for variables deemed to be essential, 62% of assessment items paired could be harmonized. Conclusion The current article shows that the DataSHaPER provides an effective and flexible approach for the retrospective harmonization of information across studies. To implement data synthesis, some additional scientific, ethico-legal and technical considerations must be addressed. The success of the DataSHaPER as a harmonization approach will depend on its continuing development and on the rigour and extent of its use. The DataSHaPER has the potential to take us closer to a truly collaborative epidemiology and offers the promise of enhanced research potential generated through synthesized databases.

  • Source
    • "In response, P 3 G sought to harmonize such variables by developing tools that would ease the integration of data across biological studies (Fortier et al., 2010). In point of fact, one of these tools, DataSHaPER, demonstrated that harmonization was possible (Fortier et al., 2011) by retrospectively assessing 53 cohorts from 21 countries, which resulted in a harmonization rate of 62% of essential variables. This made possible the " virtual " aggregation of 6.9 million individuals on any of the 148 variables, thereby creating the necessary statistical significance (power). "
    [Show abstract] [Hide abstract]
    ABSTRACT: Over the past ten years, the Public Population Project in Genomics and Society ("P3G ") has grown as a consortium. It has expanded its range of services and resources to adapt to the ever-evolving needs of the research community. From its outset - when P3G first tackled the building of biobanks as resources as well as data cataloguing and harmonization for data integration - to its new mission and vision, it has continually developed the tools for the conceptualization and design of population biobanks from their inception to their use to their closure. In so doing, P3G has become key in fostering research infrastructures to facilitate transition to the clinic. The consortium has become a crucial stakeholder in the international scientific, ethical, legal, and social research communities.
    06/2014; 3(2). DOI:10.1016/j.atg.2014.04.004
  • Source
    • "This approach depends crucially on the ability to combine the data across studies. Even before genetic analyses can begin , it is necessary to develop and test methods for harmonizing data across studies (Bookman et al., 2011; Cornelis et al., 2010; Fortier et al., 2011). The National Institute on Drug Abuse (NIDA) and the National Cancer Institute (NCI) recognized both the promise and the problems of developmental GEWIS when they wrote the following in the Request for Applications: Over many years, NIDA, other NIH Institutes, and other organizations have funded numerous highquality longitudinal and developmental studies that contain a wealth of data from individuals who are at risk for, or are in the course of development, progression, and desistance of substance abuse and related phenotypes. . "
    [Show abstract] [Hide abstract]
    ABSTRACT: The importance of including developmental and environmental measures in genetic studies of human pathology is widely acknowledged, but few empirical studies have been published. Barriers include the need for longitudinal studies that cover relevant developmental stages and for samples large enough to deal with the challenge of testing gene-environment-development interaction. A solution to some of these problems is to bring together existing data sets that have the necessary characteristics. As part of the National Institute on Drug Abuse-funded Gene-Environment-Development Initiative, our goal is to identify exactly which genes, which environments, and which developmental transitions together predict the development of drug use and misuse. Four data sets were used of which common characteristics include (1) general population samples, including males and females; (2) repeated measures across adolescence and young adulthood; (3) assessment of nicotine, alcohol, and cannabis use and addiction; (4) measures of family and environmental risk; and (5) consent for genotyping DNA from blood or saliva. After quality controls, 2,962 individuals provided over 15,000 total observations. In the first gene-environment analyses, of alcohol misuse and stressful life events, some significant gene-environment and gene-development effects were identified. We conclude that in some circumstances, already collected data sets can be combined for gene-environment and gene-development analyses. This greatly reduces the cost and time needed for this type of research. However, care must be taken to ensure careful matching across studies and variables.
    Twin Research and Human Genetics 03/2013; DOI:10.1017/thg.2013.6 · 1.92 Impact Factor
  • Source
    [Show abstract] [Hide abstract]
    ABSTRACT: Very large sample sizes are required for estimating effects which are known to be small, and for addressing intricate or complex statistical questions. This is often only achievable by pooling data from multiple stu-dies, especially in genetic epidemiology where associations between individual genetic variants and phenotypes of interest are generally weak. However, the physical pooling of experimental data across a consortium is frequently prohibited by the ethico-legal constraints that govern agreements and consents for individual studies. Study level meta-analyses are frequently used so that data from multiple studies need not be pooled to conduct an analysis, though the resulting analysis is necessarily restricted by the available summary statis-tics. The idea of maintaining data security is also of importance in other areas and approaches to carrying out 'secure analyses' that do not require sharing of data from different sources have been proposed in the technometrics literature. Crucially, the algorithms for fitting certain statistical models can be manipulated so that an individual level meta-analysis can essentially be performed without the need for pooling individual-level data by combining particular summary statistics obtained individually from each study. DataSHIELD (Data Aggregation Through Anonymous Summary-statistics from Harmonised Individual levEL Databases) is a tool to coordinate analyses of data that cannot be pooled. In this paper, we focus on explaining why a DataSHIELD approach yields identical results to an indivi-dual level meta-analysis in the case of a generalised linear model, by simply using summary statistics from each study. It is also an efficient approach to carrying out a study level meta-analysis when this is appropri-ate and when the analysis can be pre-planned. We briefly comment on the IT requirements, together with the ethical and legal challenges which must be addressed.
Show more


Available from