Article

NMR spectroscopic assessment of the structure and dynamic properties of an amphibian antimicrobial peptide (Gaegurin 4) bound to SDS micelles.

Research Institute of Pharmaceutical Sciences, College of Pharmacy, Seoul National University, San 56-1, Shillim-dong, Gwanak-gu, Seoul 151-742, Republic of Korea.
Journal of biochemistry and molecular biology (impact factor: 2.02). 03/2007; 40(2):261-9. pp.261-9
Source: PubMed

ABSTRACT The structure and dynamics of a 37-residue antimicrobial peptide gaegurin 4 (GGN4) isolated from the skin of the native Korean frog, Rana rugosa, was determined in SDS micelles by NMR spectroscopy. The solution structure of the peptide in SDS micelles was determined from 352 NOE-derived distance constraints and 22 backbone torsion angle constraints. Dynamic properties for the amide backbone were characterized by (1)H-(15)N heteronuclear NOE experiments. The structural study revealed two amphipathic helices spanning residues 2-10 and 16-32 and that the helices were connected by a flexible loop. An intraresidue disulfide bridge was formed between residues Cys31 and Cys37 near the C-terminus. The loop region (11-15) connecting the two helices are were slightly more flexible than these helices themselves. From the fact that since there is no contact NOEs between two helices, it is implied that the GGN4 peptide shows an independent motion of both helices which has an angle of about 60 degrees -120 degrees from each other.

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Keywords

1)H-(15)N heteronuclear NOE experiments
 
22 backbone torsion angle constraints
 
352 NOE-derived distance constraints
 
37-residue antimicrobial peptide gaegurin 4
 
amphipathic helices spanning residues 2-10
 
dynamics
 
flexible
 
flexible loop
 
helices
 
intraresidue disulfide bridge
 
Rana rugosa
 
residues Cys31
 
solution structure
 
structural study
 
two helices