Article

MRSD: a web server for metabolic route search and design.

School of Computer Science and Technology, University of Science and Technology of China, Hefei 230026, PR China.
Bioinformatics (impact factor: 5.47). 03/2011; 27(11):1581-2. DOI:10.1093/bioinformatics/btr160 pp.1581-2
Source: PubMed

ABSTRACT SUMMARY: We present a tool called MRSD (Metabolic Route Search and Design) to search and design routes based on the weighted compound transform diagraph. The search submodule returns routes between a source and product compound within seconds in the network of one or multiple organisms based on data from KEGG. The design submodule designs a route from an appointed compound in an interactive mode. The two complementary functions, Metabolic Route Search and Design, can be broadly used in biosynthesis, bio-pharmaceuticals and the other related fields. AVAILABILITY: bioinfo.ustc.edu.cn/softwares/MRSD/.

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Keywords

bio-pharmaceuticals
 
design routes
 
design submodule designs
 
interactive mode
 
Metabolic Route Search
 
multiple organisms
 
related fields
 
search submodule returns routes
 
seconds
 
weighted compound
 

Deguo Xia