Infinite mixture-of-experts model for sparse survival regression with application to breast cancer

Department of Computer Science, University of Basel, Bernoullistr, 16, CH-4056 Basel, Switzerland.
BMC Bioinformatics (Impact Factor: 2.58). 10/2010; 11 Suppl 8(Suppl 8):S8. DOI: 10.1186/1471-2105-11-S8-S8
Source: PubMed


We present an infinite mixture-of-experts model to find an unknown number of sub-groups within a given patient cohort based on survival analysis. The effect of patient features on survival is modeled using the Cox's proportionality hazards model which yields a non-standard regression component. The model is able to find key explanatory factors (chosen from main effects and higher-order interactions) for each sub-group by enforcing sparsity on the regression coefficients via the Bayesian Group-Lasso.
Simulated examples justify the need of such an elaborate framework for identifying sub-groups along with their key characteristics versus other simpler models. When applied to a breast-cancer dataset consisting of survival times and protein expression levels of patients, it results in identifying two distinct sub-groups with different survival patterns (low-risk and high-risk) along with the respective sets of compound markers.
The unified framework presented here, combining elements of cluster and feature detection for survival analysis, is clearly a powerful tool for analyzing survival patterns within a patient group. The model also demonstrates the feasibility of analyzing complex interactions which can contribute to definition of novel prognostic compound markers.

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