Article
Hypoxia inducible factor-1-alpha (HIF-1alpha) is related to both angiogenesis and inflammation in rheumatoid arthritis
DOI:root2/2009/Hypoinfa_
Source: OAI
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Article: Genome-wide gene expression analysis suggests an important role of hypoxia in the pathogenesis of endemic osteochondropathy Kashin-Beck disease.
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ABSTRACT: Kashin-Beck Disease (KBD) is an endemic osteochondropathy, the pathogenesis of which remains unclear now. In this study, we compared gene expression profiles of articular cartilage derived respectively from KBD patients and normal controls. Total RNA were isolated, amplified, labeled and hybridized to Agilent human 1A 22 k whole genome microarray chip. qRT-PCR was conducted to validate our microarray data. We detected 57 up-regulated genes (ratios ≥2.0) and 24 down-regulated genes (ratios ≤0.5) in KBD cartilage. To further identify the key genes involved in the pathogenesis of KBD, Bayesian analysis of variance for microarrays (BAM) software was applied and identified 12 potential key genes with an average ratio 6.64, involved in apoptosis, metabolism, cytokine & growth factor and cytoskeleton & cell movement. Gene Set Enrichment Analysis (GSEA) software was used to identify differently expressed gene ontology categories and pathways. GSEA found that a set of apoptosis, hypoxia and mitochondrial function related gene ontology categories and pathways were significantly up-regulated in KBD compared to normal controls. Based on the results of this study, we suggest that chronic hypoxia-induced mitochondrial damage and apoptosis might play an important role in the pathogenesis of KBD. Our efforts may help to understand the pathogenesis of KBD as well as other osteoarthrosis with similar articular cartilage lesions.PLoS ONE 01/2011; 6(7):e22983. · 4.09 Impact Factor
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Keywords
accurate estimate
blood vessels present
cell proliferation
HIF-1alpha -positive cells
HIF-1alpha -positive cells correlated
HIF-1alpha expression
HIF-1alpha-positive cells
inflammation present
inflammatory cells
inflammatory endothelial cell infiltration
lining layer
new therapeutic target
proliferation marker Ki67
published synovitis score
RA synovium
reproducible staining method
sub-lining layer
sublining layer
synovitis score
transcription factor HIF-1alpha