[In Process Citation]

Sean Ekins, Antony J Williams

Collaborations in Chemistry, 601 Runnymede Ave, Jenkintown, PA 19046, USA. .

Journal Article: Lab on a Chip (impact factor: 6.34). 01/2010; 10(1):13-22. DOI: 10.1039/b917760b

Abstract

Web-based technologies coupled with a drive for improved communication between scientists have resulted in the proliferation of scientific opinion, data and knowledge at an ever-increasing rate. The increasing array of chemistry-related computer-based resources now available provides chemists with a direct path to the discovery of information, once previously accessed via library services and limited to commercial and costly resources. We propose that preclinical absorption, distribution, metabolism, excretion and toxicity data as well as pharmacokinetic properties from studies published in the literature (which use animal or human tissues in vitro or from in vivo studies) are precompetitive in nature and should be freely available on the web. This could be made possible by curating the literature and patents, data donations from pharmaceutical companies and by expanding the currently freely available ChemSpider database of over 21 million molecules with physicochemical properties. This will require linkage to PubMed, PubChem and Wikipedia as well as other frequently used public databases that are currently used, mining the full text publications to extract the pertinent experimental data. These data will need to be extracted using automated and manual methods, cleaned and then published to the ChemSpider or other database such that it will be freely available to the biomedical research and clinical communities. The value of the data being accessible will improve development of drug molecules with good ADME/Tox properties, facilitate computational model building for these properties and enable researchers to not repeat the failures of past drug discovery studies.

Source: PubMed

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Keywords

21 million molecules
 
biomedical research
 
clinical communities
 
data donations
 
drug discovery studies
 
drug molecules
 
full text publications
 
good ADME/Tox properties
 
library services
 
manual methods
 
pertinent experimental data
 
pharmaceutical companies
 
pharmacokinetic properties
 
physicochemical properties
 
preclinical absorption
 
toxicity data
 
use animal
 
used public databases
 
vivo studies
 
Web-based technologies