Article
Catalytic core of a membrane-associated eukaryotic polyphosphate polymerase.
European Molecular Biology Laboratory, Structural and Computational Biology Unit, Meyerhofstrasse 1, 69117 Heidelberg, Germany.
Science (impact factor:
31.2).
05/2009;
324(5926):513-6.
DOI:10.1126/science.1168120
pp.513-6
Source: PubMed
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Citations (0)
- Cited In (2)
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Article: Highly redundant function of multiple AT-rich sequences as core promoter elements in the TATA-less RPS5 promoter of Saccharomyces cerevisiae.
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ABSTRACT: In eukaryotes, protein-coding genes are transcribed by RNA polymerase II (pol II) together with general transcription factors (GTFs). TFIID, the largest GTF composed of TATA element-binding protein (TBP) and 14 TBP-associated factors (TAFs), plays a critical role in transcription from TATA-less promoters. In metazoans, several core promoter elements other than the TATA element are thought to be recognition sites for TFIID. However, it is unclear whether functionally homologous elements also exist in TATA-less promoters in Saccharomyces cerevisiae. Here, we identify the cis-elements required to support normal levels of transcription and accurate initiation from sites within the TATA-less and TFIID-dependent RPS5 core promoter. Systematic mutational analyses show that multiple AT-rich sequences are required for these activities and appear to function as recognition sites for TFIID. A single copy of these sequences can support accurate initiation from the endogenous promoter, indicating that they carry highly redundant functions. These results show a novel architecture of yeast TATA-less promoters and support a model in which pol II scans DNA downstream from a recruited site, while searching for appropriate initiation site(s).Nucleic Acids Research 01/2011; 39(1):59-75. · 8.03 Impact Factor -
Article: Polyphosphate--an ancient energy source and active metabolic regulator.
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ABSTRACT: There are a several molecules on Earth that effectively store energy within their covalent bonds, and one of these energy-rich molecules is polyphosphate. In microbial cells, polyphosphate granules are synthesised for both energy and phosphate storage and are degraded to produce nucleotide triphosphate or phosphate. Energy released from these energetic carriers is used by the cell for production of all vital molecules such as amino acids, nucleobases, sugars and lipids. Polyphosphate chains directly regulate some processes in the cell and are used as phosphate donors in gene regulation. These two processes, energetic metabolism and regulation, are orchestrated by polyphosphate kinases. Polyphosphate kinases (PPKs) can currently be categorized into three groups (PPK1, PPK2 and PPK3) according their functionality; they can also be divided into three groups according their homology (EcPPK1, PaPPK2 and ScVTC). This review discusses historical information, similarities and differences, biochemical characteristics, roles in stress response regulation and possible applications in the biotechnology industry of these enzymes. At the end of the review, a hypothesis is discussed in view of synthetic biology applications that states polyphosphate and calcium-rich organelles have endosymbiotic origins from ancient protocells that metabolized polyphosphate.Microbial Cell Factories 08/2011; 10:63. · 3.55 Impact Factor
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Keywords
2.6 angstrom crystal structure
acceptor phosphate
adenosine triphosphate
ATP gamma-phosphate
catalytic domain
cytoplasmic polymer synthesis
eukaryotic polyphosphate polymerase
form polyP chains
lower eukaryotes
membrane-integral vacuolar transporter chaperone
metal-assisted cleavage
Mutational analysis
Nucleotide-
phosphate-bound structures
polyP
polyP membrane translocation
polyP-synthesizing enzyme
Polyphosphate
transmembrane domain
x-ray crystallography