The SWI/SNF complex and cancer. Oncogene

Department of Internal Medicine, University of Michigan College of Medicine, Ann Arbor, MI 48109-0686, USA.
Oncogene (Impact Factor: 8.56). 03/2009; 28(14):1653-68. DOI: 10.1038/onc.2009.4
Source: PubMed

ABSTRACT The mammalian SWI/SNF complexes mediate ATP-dependent chromatin remodeling processes that are critical for differentiation and proliferation. Not surprisingly, loss of SWI/SNF function has been associated with malignant transformation, and a substantial body of evidence indicates that several components of the SWI/SNF complexes function as tumor suppressors. This review summarizes the evidence that underlies this conclusion, with particular emphasis upon the two catalytic subunits of the SWI/SNF complexes, BRM, the mammalian ortholog of SWI2/SNF2 in yeast and brahma in Drosophila, and Brahma-related gene-1 (BRG1).

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Available from: David Reisman, May 19, 2014
    • "Neural progenitors require BAF45a/53a subunits to support proliferation, while differentiation to postmitotic neurons necessitates BAF45b/45c/53b (Lessard et al. 2007). The SWI/SNF family is widely known as a master regulator of gene expression, having roles in various pathways related to cell adhesion, alternative splicing, cell cycle regulation and differentiation (Reisman et al. 2009). Several members, including BRG1 and SNF5, are frequently mutated or silenced in various types of cancers, pointing to a possible function as a tumor suppressor (Clapier and Cairns 2009). "
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    ABSTRACT: The intestinal epithelium is an ideal model system for the study of normal and pathological differentiation processes. The mammalian intestinal epithelium is a single cell layer comprising proliferative crypts and differentiated villi. The crypts contain both proliferating and quiescent stem cell populations that self-renew and produce all the differentiated cell types, which are replaced every 3-5 days. The genetics of intestinal development, homeostasis, and disease are well defined, but less is known about the contribution of epigenetics in modulating these processes. Epigenetics refers to heritable phenotypic traits, including gene expression, which are independent of mutations in the DNA sequence. We have known for several decades that human colorectal cancers contain hypomethylated DNA, but the causes and consequences of this phenomenon are not fully understood. In contrast, tumor suppressor gene promoters are often hypermethylated in colorectal cancer, resulting in decreased expression of the associated gene. In this review, we describe the role that epigenetics plays in intestinal homeostasis and disease, with an emphasis on results from mouse models. We highlight the importance of producing and analyzing next-generation sequencing data detailing the epigenome from intestinal stem cell to differentiated intestinal villus cell.
    Cellular and Molecular Life Sciences CMLS 07/2015; DOI:10.1007/s00018-015-1997-9 · 5.86 Impact Factor
    • "SWI/SNF complexes are subdivided into PBAF and BAF complexes based on the presence of BAF250A or BAF250B (BAF complex ; contains either BRG1 or BRM ATPase) or BAF180 (PBAF complex; contains only BRG1 ATPase), although this distinction may not be absolute (Ryme et al. 2009; Wilson and Roberts 2011; Euskirchen et al. 2012). Importantly , inactivating mutations in several SWI/SNF components are found at high frequency in a variety of cancers, including breast cancer, implicating SWI/SNF in tumor suppression (Reisman et al. 2009; Wilson and Roberts 2011). We hypothesize that mutant p53 co-opts SWI/SNF complex function to mediate its gain-of-function transcriptional effects. "
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    ABSTRACT: Mutant p53 impacts the expression of numerous genes at the level of transcription to mediate oncogenesis. We identified vascular endothelial growth factor receptor 2 (VEGFR2), the primary functional VEGF receptor that mediates endothelial cell vascularization, as a mutant p53 transcriptional target in multiple breast cancer cell lines. Up-regulation of VEGFR2 mediates the role of mutant p53 in increasing cellular growth in two-dimensional (2D) and three-dimensional (3D) culture conditions. Mutant p53 binds near the VEGFR2 promoter transcriptional start site and plays a role in maintaining an open conformation at that location. Relatedly, mutant p53 interacts with the SWI/SNF complex, which is required for remodeling the VEGFR2 promoter. By both querying individual genes regulated by mutant p53 and performing RNA sequencing, the results indicate that >40% of all mutant p53-regulated gene expression is mediated by SWI/SNF. We surmise that mutant p53 impacts transcription of VEGFR2 as well as myriad other genes by promoter remodeling through interaction with and likely regulation of the SWI/SNF chromatin remodeling complex. Therefore, not only might mutant p53-expressing tumors be susceptible to anti VEGF therapies, impacting SWI/SNF tumor suppressor function in mutant p53 tumors may also have therapeutic potential. © 2015 Pfister et al.; Published by Cold Spring Harbor Laboratory Press.
    Genes & development 06/2015; 29(12). DOI:10.1101/gad.263202.115 · 12.64 Impact Factor
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    • "ATP-dependent chromatin-remodeling factors are critical for the expression of the eukaryotic genome. Four major classes of ATP-dependent chromatin remodeling complexes have been identified, including the extensively studied SWI/SNF complexes (Narlikar et al., 2002; Reisman et al., 2009). "
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    ABSTRACT: The control of self-renewal and differentiation of neural stem and progenitor cells is a crucial issue in stem cell and cancer biology. Drosophila type II neuroblast lineages are prone to developing impaired neuroblast homeostasis if the limited self-renewing potential of intermediate neural progenitors (INPs) is unrestrained. Here, we demonstrate that Drosophila SWI/SNF chromatin remodeling Brahma (Brm) complex functions cooperatively with another chromatin remodeling factor, Histone deacetylase 3 (HDAC3) to suppress the formation of ectopic type II neuroblasts. We show that multiple components of the Brm complex and HDAC3 physically associate with Earmuff (Erm), a type II-specific transcription factor that prevents dedifferentiation of INPs into neuroblasts. Consistently, the predicted Erm-binding motif is present in most of known binding loci of Brm. Furthermore, brm and hdac3 genetically interact with erm to prevent type II neuroblast overgrowth. Thus, the Brm-HDAC3-Erm repressor complex suppresses dedifferentiation of INPs back into type II neuroblasts. DOI:
    eLife Sciences 03/2014; 3:e01906. DOI:10.7554/eLife.01906 · 8.52 Impact Factor
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