Gender influences monoallelic expression of ATP10A in human brain. Hum Genet

Medical Microbiology and Immunology, Rowe Program in Human Genetics, School of Medicine, University of California, One Shields Ave, Davis, CA 95616, USA.
Human Genetics (Impact Factor: 4.52). 09/2008; 124(3):235-42. DOI: 10.1007/s00439-008-0546-0
Source: PubMed

ABSTRACT Human chromosome 15q11-13 and the syntenic region of mouse chromosome 7 contain multiple imprinted genes necessary for proper neurodevelopment. Due to imprinting, paternal 15q11-13 deficiencies lead to Prader-Willi syndrome (PWS) while maternal 15q11-13 deficiencies cause Angelman syndrome (AS). The mechanisms involved in parental imprinting of this locus are conserved between human and mouse, yet inconsistencies exist in reports of imprinting of the maternally expressed gene Atp10a/ATP10A. Excess maternal 15q11-13 dosage often leads to autism-spectrum disorder therefore further investigation to characterize the true imprinting status of ATP10A in humans was warranted. In this study, we examined allelic expression of ATP10A transcript in 16 control brain samples, and found that 10/16 exhibited biallelic expression while only 6/16 showed monoallelic expression. Contrary to the expectation for a maternally expressed imprinted gene, quantitative RT-PCR revealed significantly reduced ATP10A transcript in Prader-Willi syndrome brains with two maternal chromosomes due to uniparental disomy (PWS UPD). Furthermore, a PWS UPD brain sample with monoallelic ATP10A expression demonstrated that monoallelic expression can be independent of imprinting. Investigation of factors that may influence allelic ATP10A expression status revealed that gender has a major affect, as females were significantly more likely to have monoallelic ATP10A expression than males. Regulatory sequences were also examined, and a promoter polymorphism that disrupts binding of the transcription factor Sp1 also potentially contributes to allelic expression differences in females. Our results show that monoallelic expression of human ATP10A is variable in the population and is influenced by both gender and common genetic variation.

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Available from: Janine M Lasalle, Aug 23, 2015
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    • "Complete Ube3a antisense transcription would be expected to block Pol II from transcribing the sense transcript, resulting in paternally imprinted Ube3a only in mature neurons exhibiting full decondensation of Snrpn-Ube3a. Cellular heterogeneity and variable processivity of Pol II beyond the 3 0 end of Ube3a on the paternal allele may also explain the variable imprinting status of Atp10a [Kashiwagi et al., 2003; Kayashima et al., 2003a,b; Hogart et al., 2008]. "
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