QM/MM Investigations Of Organic Chemistry Oriented Questions.
ABSTRACT About 35 years after its first suggestion, QM/MM became the standard theoretical approach to investigate enzymatic structures and processes. The success is due to the ability of QM/MM to provide an accurate atomistic picture of enzymes and related processes. This picture can even be turned into a movie if nuclei-dynamics is taken into account to describe enzymatic processes. In the field of organic chemistry, QM/MM methods are used to a much lesser extent although almost all relevant processes happen in condensed matter or are influenced by complicated interactions between substrate and catalyst. There is less importance for theoretical organic chemistry since the influence of nonpolar solvents is rather weak and the effect of polar solvents can often be accurately described by continuum approaches. Catalytic processes (homogeneous and heterogeneous) can often be reduced to truncated model systems, which are so small that pure quantum-mechanical approaches can be employed. However, since QM/MM becomes more and more efficient due to the success in software and hardware developments, it is more and more used in theoretical organic chemistry to study effects which result from the molecular nature of the environment. It is shown by many examples discussed in this review that the influence can be tremendous, even for nonpolar reactions. The importance of environmental effects in theoretical spectroscopy was already known. Due to its benefits, QM/MM can be expected to experience ongoing growth for the next decade.In the present chapter we give an overview of QM/MM developments and their importance in theoretical organic chemistry, and review applications which give impressions of the possibilities and the importance of the relevant effects. Since there is already a bunch of excellent reviews dealing with QM/MM, we will discuss fundamental ingredients and developments of QM/MM very briefly with a focus on very recent progress. For the applications we follow a similar strategy.
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ABSTRACT: Ionic liquids—which are special solvents composed entirely of ions—are difficult albeit interesting to study for several reasons. Owing to the many possible cation and anion combinations that form ionic liquids, common properties are hard to classify for them, which makes the theoretical investigation crucial for ionic liquids. The system size, the amount of possible isomers including cation–anion orientation and coordination, as well as the rotation of the side chain(s) prevent the use of high-level electronic structure methods, and density functional theory is the method of choice. Dispersion forces—although they are small compared to electrostatics—play a major role in ionic liquids; therefore, methods that describe such kind of interplay are preferred. Between the cation and the anion, there is a sizable charge transfer, which has important consequences for molecular dynamics simulations and force field development. Already based on the first generation of force fields important discoveries were made, namely that ionic liquids are nanostructured. Moreover, it was possible to predict that their distillation is possible. Throughout the construction of these force fields, transferability was taken into account which allowed them to describe homologous series. For studying reactions in ionic liquid (IL) media, continuum models were found to improve the results. Ab initio molecular dynamics (AIMD) and quantum mechanics (QM)/molecular mechanics (MM) approaches are well suited for spontaneous events. In case of very large systems, such as cellulose in ionic liquids, coarse-grained methods are providing insight and are applied more frequently. This makes ionic liquids real multiscalar systems.Conflict of interest: The authors have declared no conflicts of interest for this article.For further resources related to this article, please visit the WIREs website.Wiley Interdisciplinary Reviews: Computational Molecular Science. 12/2014;