Article

A scalable and portable framework for massively parallel variable selection in genetic association studies.

Division of Biostatistics, Department of Preventive Medicine, Los Angeles, CA 90089, USA.
Bioinformatics (Impact Factor: 5.47). 03/2012; 28(5):719-20. DOI: 10.1093/bioinformatics/bts015
Source: PubMed

ABSTRACT The deluge of data emerging from high-throughput sequencing technologies poses large analytical challenges when testing for association to disease. We introduce a scalable framework for variable selection, implemented in C++ and OpenCL, that fits regularized regression across multiple Graphics Processing Units. Open source code and documentation can be found at a Google Code repository under the URL http://bioinformatics.oxfordjournals.org/content/early/2012/01/10/bioinformatics.bts015.abstract. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

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