Conference Paper

The Complexity and Viability of DNA Computations.

Conference: Biocomputing and emergent computation: Proceedings of BCEC97
Source: DBLP
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    ABSTRACT: We p resent, in this paper ,ad etailed translation from algorithms implemented on a standard model of paral- lel computation — the CREW PRAM — to DNA-based methods. Our translation is efficient in the follow- ing sense: if A is a PRAM algorithm using P (n )p rocessors, S (n )s pace, and taking T (n )t ime then the total volume of DN Au sed is O ( P (n) T (n) S (n )l ogS (n )) ;f urthermore, the total computation time of the DNA algorithm is bounded by O ( T (n )l ogS (n )) .A sac onsequence our methods give a direct translation from any NC algorithm into an effective DNA algorithm. 1. Intr oduction