[Show abstract][Hide abstract] ABSTRACT: 19th IEEE International Parallel and Distributed Processing Symposium (IPDPS'05), April 4-8, 2005, Denver, Colorado Modeling and simulation of a cellular system on computers are now becoming an essential process in biological researches. However, modern PCs can't provide enough performance to simulate large-scale biochemical networks. ReCSiP is the alternative FPGA-based solution for biochemical simulations. In this paper, the novel method of biochemical simulation with multiple reaction models on an FPGA is proposed. The method generates optimal circuit and its optimal schedule for each simulation models written in SBML, the standard markup language in systems biology. ReCSiP has a Xilinx's XC2VP70 and achieved over 20-fold speedup compared to Intel’s PentiumIII 1.13GHz
[Show abstract][Hide abstract] ABSTRACT: A framework for power optimisation on FPGA based designs at various functional levels, and high level power estimation methodologies have been presented in this paper. Results obtained are very promising and the developed framework can be employed to power down the FPGA, estimate and model the power for other parameterisable IP cores
Field Programmable Logic and Applications, 2006. FPL '06. International Conference on; 09/2006
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