Article

Molecular characterization of the 3' terminus of the simian hemorrhagic fever virus genome.

Department of Veterinary Microbiology and Parasitology, Louisiana State University School of Veterinary Medicine, Baton Rouge 70803.
Journal of Virology (impact factor: 5.4). 05/1995; 69(4):2679-83. pp.2679-83
Source: PubMed

ABSTRACT The 3' end of the simian hemorrhagic fever virus (SHFV) single-stranded RNA genome was cloned and sequenced. Adjacent to the 3' poly(A) tract, we identified a 76-nucleotide noncoding region preceded by two overlapping reading frames (ORFs). The ultimate 3' ORF of the viral genome encodes the capsid protein, and the penultimate ORF encodes the smallest SHFV envelope protein. These two ORFs overlap each other by 26 nucleotides. Northern (RNA) blot hybridization analyses of cytoplasmic RNA extracts from SHFV-infected MA-104 cells with gene-specific probes revealed the presence of full-length genomic RNA as well as six subgenomic SHFV-specific mRNA species. The subgenomic mRNAs are 3' coterminal. In its virion morphology and size, genome structure and length, and replication strategy, SHFV is most similar to lactate dehydrogenase-elevating virus, equine arteritis virus, and porcine reproductive and respiratory syndrome virus.

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Keywords

76-nucleotide noncoding region preceded
 
capsid protein
 
full-length genomic RNA
 
gene-specific probes
 
genome structure
 
ORFs
 
overlapping reading frames
 
penultimate ORF encodes
 
porcine reproductive
 
SHFV
 
SHFV-infected MA-104 cells
 
simian hemorrhagic fever virus
 
smallest SHFV envelope protein
 
subgenomic mRNAs
 
subgenomic SHFV-specific mRNA species
 
two ORFs overlap
 
ultimate 3' ORF
 
virion morphology
 

E K Godeny