Analysis of fMRI Data by Blind Separation into Independent Spatial Components

Howard Hughes Medical Institute, Salk Institute for Biological Studies, La Jolla, California 92186-5800, USA.
Human Brain Mapping (Impact Factor: 6.92). 01/1998; 6(3):160-88. DOI: 10.1002/(SICI)1097-0193(1998)6:3<160::AID-HBM5>3.0.CO;2-1
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ABSTRACT Current analytical techniques applied to functional magnetic resonance imaging (fMRI) data require a priori knowledge or specific assumptions about the time courses of processes contributing to the measured signals. Here we describe a new method for analyzing fMRI data based on the independent component analysis (ICA) algorithm of Bell and Sejnowski ([1995]: Neural Comput 7:1129-1159). We decomposed eight fMRI data sets from 4 normal subjects performing Stroop color-naming, the Brown and Peterson work/number task, and control tasks into spatially independent components. Each component consisted of voxel values at fixed three-dimensional locations (a component "map"), and a unique associated time course of activation. Given data from 144 time points collected during a 6-min trial, ICA extracted an equal number of spatially independent components. In all eight trials, ICA derived one and only one component with a time course closely matching the time course of 40-sec alternations between experimental and control tasks. The regions of maximum activity in these consistently task-related components generally overlapped active regions detected by standard correlational analysis, but included frontal regions not detected by correlation. Time courses of other ICA components were transiently task-related, quasiperiodic, or slowly varying. By utilizing higher-order statistics to enforce successively stricter criteria for spatial independence between component maps, both the ICA algorithm and a related fourth-order decomposition technique (Comon [1994]: Signal Processing 36:11-20) were superior to principal component analysis (PCA) in determining the spatial and temporal extent of task-related activation. For each subject, the time courses and active regions of the task-related ICA components were consistent across trials and were robust to the addition of simulated noise. Simulated movement artifact and simulated task-related activations added to actual fMRI data were clearly separated by the algorithm. ICA can be used to distinguish between nontask-related signal components, movements, and other artifacts, as well as consistently or transiently task-related fMRI activations, based on only weak assumptions about their spatial distributions and without a priori assumptions about their time courses. ICA appears to be a highly promising method for the analysis of fMRI data from normal and clinical populations, especially for uncovering unpredictable transient patterns of brain activity associated with performance of psychomotor tasks.

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Available from: Scott Makeig, Aug 18, 2015
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    • "Consequently, a more adapted method of analysis should be applied, a method that should not be biased by differences in resting-state levels. An alternative to the classical statistical parametric mapping in neuroimaging is independent components analysis (ICA; McKeown et al., 1998). This method allows us to break down a set of brain images obtained during different conditions into a number of spatially independent component maps with their associated activation waveforms . "
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    ABSTRACT: It has been demonstrated in earlier studies that patients with a cochlear implant have increased abilities for audio-visual integration because the crude information transmitted by the cochlear implant requires the persistent use of the complementary speech information from the visual channel. The brain network for these abilities needs to be clarified. We used an independent components analysis (ICA) of the activation (H2 (15) O) positron emission tomography data to explore occipito-temporal brain activity in post-lingually deaf patients with unilaterally implanted cochlear implants at several months post-implantation (T1), shortly after implantation (T0) and in normal hearing controls. In between-group analysis, patients at T1 had greater blood flow in the left middle temporal cortex as compared with T0 and normal hearing controls. In within-group analysis, patients at T0 had a task-related ICA component in the visual cortex, and patients at T1 had one task-related ICA component in the left middle temporal cortex and the other in the visual cortex. The time courses of temporal and visual activities during the positron emission tomography examination at T1 were highly correlated, meaning that synchronized integrative activity occurred. The greater involvement of the visual cortex and its close coupling with the temporal cortex at T1 confirm the importance of audio-visual integration in more experienced cochlear implant subjects at the cortical level. © 2015 Federation of European Neuroscience Societies and John Wiley & Sons Ltd.
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    • "Only independent components significantly correlated (p < 10 −5 ) with any type of stimuli were considered as the stimuli-related components. Meanwhile , the spatially discrete cortical regions were identified in the spatial map of each significantly temporally-correlated component by thresholding the amplitude of spatial map Z-score (the probability of representing its temporal mode in that spatial map) at a voxel-wise threshold (Z > 3.72, p < 10 −4 ), corrected at cluster-wise extent (voxel size > 20, 2 × 2 × 2 mm, p < 0.005 corrected) [19] [31]. These spatially discrete regions were then used as masks to extract regression coefficient for each stimulus condition from traditional individual GLM analysis. "
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    Neuroscience Letters 01/2015; 584:351-355. DOI:10.1016/j.neulet.2014.10.054 · 2.06 Impact Factor
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    • "Such statistical methods as principal component analysis (PCA), general linear models (GLM), and independent component analysis (ICA), have been developed to extract both spatial and temporal patterns of interest from functional signals, and to understand how different brain regions interact with each other. For instance, ICA has been widely used in single-subject fMRI/EEG studies to separate spatially or temporally independent components (McKeown et al. (1998); Beckmann and Smith (2004)). However, the extension of these methods to group inference is not straightforward due to striking neuroanatomic variations, and thus it remains an active research topic (Calhoun, Liu, and Adalı (2009)). "
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