Article
Solution 1H NMR of the active site of substrate-bound, cyanide-inhibited human heme oxygenase. comparison to the crystal structure of the water-ligated form.
University of California, Department of Chemistry, Davis, California 95616, USA.
Journal of Biological Chemistry (impact factor:
4.77).
06/2001;
276(19):15676-87.
DOI:10.1074/jbc.M009974200
pp.15676-87
Source: PubMed
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Citations (0)
- Cited In (1)
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Article: Identification of ligand binding sites of proteins using the Gaussian Network Model.
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ABSTRACT: The nonlocal nature of the protein-ligand binding problem is investigated via the Gaussian Network Model with which the residues lying along interaction pathways in a protein and the residues at the binding site are predicted. The predictions of the binding site residues are verified by using several benchmark systems where the topology of the unbound protein and the bound protein-ligand complex are known. Predictions are made on the unbound protein. Agreement of results with the bound complexes indicates that the information for binding resides in the unbound protein. Cliques that consist of three or more residues that are far apart along the primary structure but are in contact in the folded structure are shown to be important determinants of the binding problem. Comparison with known structures shows that the predictive capability of the method is significant.PLoS ONE 01/2011; 6(1):e16474. · 4.09 Impact Factor
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Keywords
20 degrees tilt
active site residues
alpha-gamma-meso axis
alpha-meso bridge
alpha-meso position
alpha-meso ring opening
axial ligand
closed pocket conducive
crystal structure
delta-meso positions
distal helix
distal ligand
heme normal
major axis
major isomer
proximal helix
strong hydrogen bonds
substrate-bound human heme oxygenase
two-dimensional NMR
water-ligated substrate complex