Expression, purification, and activities of full‐length and truncated versions of the integral membrane protein Vpu from HIV‐1

Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093, USA.
Protein Science (Impact Factor: 2.85). 04/2002; 11(3):546-57. DOI: 10.1110/ps.37302
Source: PubMed


Vpu is an 81-residue accessory protein of HIV-1. Because it is a membrane protein, it presents substantial technical challenges for the characterization of its structure and function, which are of considerable interest because the protein enhances the release of new virus particles from cells infected with HIV-1 and induces the intracellular degradation of the CD4 receptor protein. The Vpu-mediated enhancement of the virus release rate from HIV-1-infected cells is correlated with the expression of an ion channel activity associated with the transmembrane hydrophobic helical domain. Vpu-induced CD4 degradation and, to a lesser extent, enhancement of particle release are both dependent on the phosphorylation of two highly conserved serine residues in the cytoplasmic domain of Vpu. To define the minimal folding units of Vpu and to identify their activities, we prepared three truncated forms of Vpu and compared their structural and functional properties to those of full-length Vpu (residues 2-81). Vpu(2-37) encompasses the N-terminal transmembrane alpha-helix; Vpu(2-51) spans the N-terminal transmembrane helix and the first cytoplasmic alpha-helix; Vpu(28-81) includes the entire cytoplasmic domain containing the two C-terminal amphipathic alpha-helices without the transmembrane helix. Uniformly isotopically labeled samples of the polypeptides derived from Vpu were prepared by expression of fusion proteins in E. coli and were studied in the model membrane environments of lipid micelles by solution NMR spectroscopy and oriented lipid bilayers by solid-state NMR spectroscopy. The assignment of backbone resonances enabled the secondary structure of the constructs corresponding to the transmembrane and the cytoplasmic domains of Vpu to be defined in micelle samples by solution NMR spectroscopy. Solid-state NMR spectra of the polypeptides in oriented lipid bilayers demonstrated that the topology of the domains is retained in the truncated polypeptides. The biological activities of the constructs of Vpu were evaluated. The ion channel activity is confined to the transmembrane alpha-helix. The C-terminal alpha-helices modulate or promote the oligomerization of Vpu in the membrane and stabilize the conductive state of the channel, in addition to their involvement in CD4 degradation.

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Available from: Stephan Bour, Sep 29, 2015
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    • "The TM domain of Vpu is important for its ion channel activity, tetherin degradation and virus release, and hence only this domain was considered for our modeling studies. Since the TM domain is known to have a helical structure [21-23,45-47] the first 32 residues of HIV-1 NL4-3 Vpu (MVPIIVAIVALVVAIII AIVVWSIVIIEYRKI) were modeled as an idealized α-helix using the molecular modeling program SYBYL7.2 (Tripos International, St. Louis, Missouri, USA; While previous studies have shown residues 5 to 29 to form the TM domain [21,22,48] we have extended this by a few residues on either side to ensure that there are no destabilizing effects due to abrupt termination of the TM domain. "
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    ABSTRACT: The human immunodeficiency virus type I (HIV-1) Vpu protein is 81 residues long and has two cytoplasmic and one transmembrane (TM) helical domains. The TM domain oligomerizes to form a monovalent cation selective ion channel and facilitates viral release from host cells. Exactly how many TM domains oligomerize to form the pore is still not understood, with experimental studies indicating the existence of a variety of oligomerization states. In this study, molecular dynamics (MD) simulations were performed to investigate the propensity of the Vpu TM domain to exist in tetrameric, pentameric, and hexameric forms. Starting with an idealized α-helical representation of the TM domain, a thorough search for the possible orientations of the monomer units within each oligomeric form was carried out using replica-exchange MD simulations in an implicit membrane environment. Extensive simulations in a fully hydrated lipid bilayer environment on representative structures obtained from the above approach showed the pentamer to be the most stable oligomeric state, with interhelical van der Waals interactions being critical for stability of the pentamer. Atomic details of the factors responsible for stable pentamer structures are presented. The structural features of the pentamer models are consistent with existing experimental information on the ion channel activity, existence of a kink around the Ile17, and the location of tetherin binding residues. Ser23 is proposed to play an important role in ion channel activity of Vpu and possibly in virus propagation.
    PLoS ONE 11/2013; 8(11):e79779. DOI:10.1371/journal.pone.0079779 · 3.23 Impact Factor
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    • "Although we have not defined the exact landscape of the binding interface between Vpu and tetherin, we provided in this study new evidence suggesting that the Vpu TM domain directly contributes to the physical interaction with tetherin and additional insight into the binding model by identifying amino acids within the Vpu TM domain important for tetherin antagonism. Several NMR analyses [51], [52], [53], [54], [55] have provided us some structural features of the Vpu TM domain, and other structural studies have shed light on the structure of Vpu as it relates to its function [56], [57]. Indeed, the wealth of existing structural information has enabled the use of computational methods to clarify the mechanisms of Vpu function on an atomic scale [58], [59], [60], [61], [62]. "
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    ABSTRACT: Tetherin (BST-2/CD317) is an interferon-inducible antiviral protein that restricts the release of enveloped viruses from infected cells. The HIV-1 accessory protein Vpu can efficiently antagonize this restriction. In this study, we analyzed mutations of the transmembrane (TM) domain of Vpu, including deletions and substitutions, to delineate amino acids important for HIV-1 viral particle release and in interactions with tetherin. The mutants had similar subcellular localization patterns with that of wild-type Vpu and were functional with respect to CD4 downregulation. We showed that the hydrophobic binding surface for tetherin lies in the core of the Vpu TM domain. Three consecutive hydrophobic isoleucine residues in the middle region of the Vpu TM domain, I15, I16 and I17, were important for stabilizing the tetherin binding interface and determining its sensitivity to tetherin. Changing the polarity of the amino acids at these positions resulted in severe impairment of Vpu-induced tetherin targeting and antagonism. Taken together, these data reveal a model of specific hydrophobic interactions between Vpu and tetherin, which can be potentially targeted in the development of novel anti-HIV-1 drugs.
    PLoS ONE 06/2011; 6(6):e20890. DOI:10.1371/journal.pone.0020890 · 3.23 Impact Factor
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    • "First, a Vpu-associated ion channel activity was implicated in the regulation of virus release. Vpu has the ability to assemble into a monovalent cation-specific ion channel [15-19]. Randomization of Vpu's TM domain did not affect membrane association but inhibited Vpu's ion channel activity and, at the same time, impaired its ability to regulate virus release [12,17]. "
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    ABSTRACT: The Human Immunodeficiency virus type 1 (HIV-1) Vpu protein enhances virus release from infected cells and induces proteasomal degradation of CD4. Recent work identified BST-2/CD317 as a host factor that inhibits HIV-1 virus release in a Vpu sensitive manner. A current working model proposes that BST-2 inhibits virus release by tethering viral particles to the cell surface thereby triggering their subsequent endocytosis. Here we defined structural properties of BST-2 required for inhibition of virus release and for sensitivity to Vpu. We found that BST-2 is modified by N-linked glycosylation at two sites in the extracellular domain. However, N-linked glycosylation was not important for inhibition of HIV-1 virus release nor did it affect surface expression or sensitivity to Vpu. Rodent BST-2 was previously found to form cysteine-linked dimers. Analysis of single, double, or triple cysteine mutants revealed that any one of three cysteine residues present in the BST-2 extracellular domain was sufficient for BST-2 dimerization, for inhibition of virus release, and sensitivity to Vpu. In contrast, BST-2 lacking all three cysteines in its ectodomain was unable to inhibit release of wild type or Vpu-deficient HIV-1 virions. This defect was not caused by a gross defect in BST-2 trafficking as the mutant protein was expressed at the cell surface of transfected 293T cells and was down-modulated by Vpu similar to wild type BST-2. While BST-2 glycosylation was functionally irrelevant, formation of cysteine-linked dimers appeared to be important for inhibition of virus release. However lack of dimerization did not prevent surface expression or Vpu sensitivity of BST-2, suggesting Vpu sensitivity and inhibition of virus release are separable properties of BST-2.
    Retrovirology 10/2009; 6(1):80. DOI:10.1186/1742-4690-6-80 · 4.19 Impact Factor
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