Article
Thirteenth annual pezcoller symposium: focusing analytical tools on complexity in cancer.
Pharmacology and Therapeutics Department, Roswell Park Cancer Institute, Buffalo, New York 14263, USA.
Cancer Research (impact factor:
7.86).
08/2002;
62(13):3883-7.
pp.3883-7
Source: PubMed
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Citations (0)
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Article: Cancer reduces transcriptome specialization.
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ABSTRACT: A central goal of cancer biology is to understand how cells from this family of genetic diseases undergo specific morphological and physiological changes and regress to a de-regulated state of the cell cycle. The fact that tumors are unable to perform most of the specific functions of the original tissue led us to hypothesize that the degree of specialization of the transcriptome of cancerous tissues must be less than their normal counterparts. With the aid of information theory tools, we analyzed four datasets derived from transcriptomes of normal and tumor tissues to quantitatively test the hypothesis that cancer reduces transcriptome specialization. Here, we show that the transcriptional specialization of a tumor is significantly less than the corresponding normal tissue and comparable with the specialization of dedifferentiated embryonic stem cells. Furthermore, we demonstrate that the drop in specialization in cancerous tissues is largely due to a decrease in expression of genes that are highly specific to the normal organ. This approach gives us a better understanding of carcinogenesis and offers new tools for the identification of genes that are highly influential in cancer progression.PLoS ONE 01/2010; 5(5):e10398. · 4.09 Impact Factor
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Keywords
analytical tools
antitumor action
cancer cell
cancer cells
cancer therapy
cancer transcriptomes
cases distortions
cell environment
cell proliferation
cellular components
complex interactions regulating cancer cells
complex signaling networks
complex signaling pathways
functional relevance
individual cancers
molecular models
new molecular targets
new targets exploitable
specific characteristics
unique specific target