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Research experience
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Sep 2010–
presentTeaching: Basic Course in Laboratory Work
Palacký University · Department of BiochemistryCzech Republic -
Dec 2009–
presentResearch: Identification of zeatin cis-trans-isomerase
Palacký UniversityCzech Republic · OlomoucPurification, identification and characterisation of zeatin cis-trans isomerase. This enzyme was described nearly 20 years ago, but since that time nobody was able to identify it. We are the first to successfully measure activity of the isomerase.
Education
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Sep 2010
Palacký University
Biochemistry · PhDCzech Republic · Olomouc
Other
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LanguagesCzech, English, German
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Scientific MembershipsThe Protein Society
Questions and Answers (312) View all
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Answer added in Protein Purification28 (Total) enzyme activity significantly increased after concentration of proteins - reason?By Tomáš Hluska · Palacký University of OlomoucTomáš Hluska · Palacký University of Olomoucno, I use standardly 5 ul of my enzyme and then recalculate to get the activity in 1 ml maybe I'll try the addition of PEG/glycerol/BSA. What final c... [more]no, I use standardly 5 ul of my enzyme and then recalculate to get the activity in 1 ml maybe I'll try the addition of PEG/glycerol/BSA. What final concentration range should I try? If it was true, what does it say about my enzyme besides it's crapy? :)Following
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Answer added in Protein Purification Techniques14 How to clear protein solution and not lose all activity?By Tomáš Hluska · Palacký University of OlomoucTomáš Hluska · Palacký University of OlomoucI know these filters, I use them regularly. Just yesterday I spend few hours trying to concentrate quite diluted sample. When using it for crude extra... [more]I know these filters, I use them regularly. Just yesterday I spend few hours trying to concentrate quite diluted sample. When using it for crude extract, it usually takes days to concentrate. BTW SUPERnatant is what stays upFollowing
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Answer added in Protein Purification28 (Total) enzyme activity significantly increased after concentration of proteins - reason?By Tomáš Hluska · Palacký University of OlomoucTomáš Hluska · Palacký University of OlomoucThanks for all the answers. I was talking about TOTAL activity which increased 2-3 times. I didn't measure protein amount in the diluted samples, so... [more]Thanks for all the answers. I was talking about TOTAL activity which increased 2-3 times. I didn't measure protein amount in the diluted samples, so I don't know the change of specific activity. However, as I can compare it with the total activity before dilution, it basically returned to original value (let's say before chromatography I had 2 nkat, after chromatography I had 1 nkat and after concentration I had 2 nkat again). For that reason I don't think it's denaturation because than it had to be reversible. I don't think some sort of inhibitor would be involved, because the enzyme was purified through 2 chromatographic columns, so theoretically it should be gone before if it was so loose to get lost after concentration.Following
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Answer added in Crosslinking3 Half-life of formaldehyde crosslinks at 37C?By Sebastian Vencken · Trinity College DublinTomáš Hluska · Palacký University of OlomoucI don't think they would reverse crosslinking, but they are inhibitors because they compete with the amino groups in proteinsI don't think they would reverse crosslinking, but they are inhibitors because they compete with the amino groups in proteinsFollowing
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Question asked in Protein Purification28 (Total) enzyme activity significantly increased after concentration of proteins - reason?I recently concentrated my partially purified protein (from maize flowers) about 13-50 times and the total activity increased about 2-3-fold. I was th... [more]I recently concentrated my partially purified protein (from maize flowers) about 13-50 times and the total activity increased about 2-3-fold. I was thinking about reasons of this and I could come up with two: 1) My protein is multimer, thus concentration favoures formation of multimer and increases activity. 2) My buffer contains beta-mercaptoethanol, because otherwise the enzyme is immediately dead. However, bME inhibits the enzymatic activity, but I'm adding it anyway, to inhibit other enzyme depleting my substrate. So, my idea was - when I add concentrated enzyme, I add also more impurities and stuff with which can bME react and thus it's concentration in the reaction mixture will be lower. However, it is already in the protein prepare, so there is no need to be used after addition to reaction mixture. What are your thoughts? Are both my ideas just stupid or could there be something about them?By Tomáš Hluska · Palacký University of OlomoucFollowing
Publications (3) View all
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Article: Vacuolar and cytosolic cytokinin dehydrogenases of Arabidopsis thaliana: heterologous expression, purification and properties.
Marta Kowalska, Petr Galuszka, Jitka Frébortová, Marek Šebela, Tibor Béres, Tomáš Hluska, Mária Šmehilová, Kristin D Bilyeu, Ivo Frébort[show abstract] [hide abstract]
ABSTRACT: The catabolism of cytokinins is a vital component of hormonal regulation, contributing to the control of active forms of cytokinins and their cellular distribution. The enzyme catalyzing the irreversible cleavage of N(6)-side chains from cytokinins is a flavoprotein classified as cytokinin dehydrogenase (CKX, EC 1.5.99.12). CKXs also show low cytokinin oxidase activity, but molecular oxygen is a comparatively poor electron acceptor. The CKX gene family of Arabidopsis thaliana comprises seven members. Four code for proteins secreted to the apoplast, the remainder are not secreted. Two are targeted to the vacuoles and one is restricted to the cytosol. This study presents the purification and characterization of each of these non-secreted CKX enzymes and substrate specificities are discussed with respect to their compartmentation. Vacuolar enzymes AtCKX1 and AtCKX3 were produced in Pichia pastoris and cytosolic enzyme AtCKX7 was expressed in Escherichia coli. The recombinant proteins were purified by column chromatography. All enzymes preferred synthetic electron acceptors over oxygen, namely potassium ferricyanide and 2,3-dimetoxy-5-methyl-1,4-benzoquinone (Q(0)). In slightly acidic conditions (pH 5.0), N(6)-(2-isopentenyl)adenine 9-glucoside (iP9G) was the best substrate for AtCKX1 and AtCKX7, whereas AtCKX3 preferentially degraded N(6)-(2-isopentenyl)adenine 9-riboside-5'-monophosphate (iPMP). Moreover, vacuolar AtCKX enzymes in certain conditions degraded N(6)-(2-isopentenyl)adenine di- and triphosphates two to five times more effectively than its monophosphate.Phytochemistry 12/2010; 71(17-18):1970-8. · 3.35 Impact Factor -
Article: Evolution of cytokinin biosynthesis and degradation.
[show abstract] [hide abstract]
ABSTRACT: Cytokinin hormones are important regulators of development and environmental responses of plants that execute their action via the molecular machinery of signal perception and transduction. The limiting step of the whole process is the availability of the hormone in suitable concentrations in the right place and at the right time to interact with the specific receptor. Hence, the hormone concentrations in individual tissues, cells, and organelles must be properly maintained by biosynthetic and metabolic enzymes. Although there are merely two active cytokinins, isopentenyladenine and its hydroxylated derivative zeatin, a variety of conjugates they may form and the number of enzymes/isozymes with varying substrate specificity involved in their biosynthesis and conversion gives the plant a variety of tools for fine tuning of the hormone level. Recent genome-wide studies revealed the existence of the respective coding genes and gene families in plants and in some bacteria. This review summarizes present knowledge on the enzymes that synthesize cytokinins, form cytokinin conjugates, and carry out irreversible elimination of the hormones, including their phylogenetic analysis and possible variations in different organisms.Journal of Experimental Botany 02/2011; 62(8):2431-52. · 5.36 Impact Factor -
Article: Characterization of new maize genes putatively involved in cytokinin metabolism and their expression during osmotic stress in relation to cytokinin levels.
Sárka Vyroubalová, Katerina Václavíková, Veronika Turecková, Ondrej Novák, Mária Smehilová, Tomás Hluska, Ludmila Ohnoutková, Ivo Frébort, Petr Galuszka[show abstract] [hide abstract]
ABSTRACT: Plant hormones, cytokinins (CKs), have been for a long time considered to be involved in plant responses to stress. However, their exact roles in processes linked to stress signalization and acclimatization to adverse environmental conditions are unknown. In this study, expression profiles of the entire gene families of CK biosynthetic and degradation genes in maize (Zea mays) during development and stress responses are described. Transcript abundance of particular genes is discussed in relation to the levels of different CK metabolites. Salt and osmotic stresses induce expression of some CK biosynthetic genes in seedlings of maize, leading to a moderate increase of active forms of CKs lasting several days during acclimatization to stress. A direct effect of CKs to mediate activation of stress responses does not seem to be possible due to the slow changes in metabolite levels. However, expression of genes involved in cytokinin signal transduction is uniformly down-regulated within 0.5 h of stress induction by an unknown mechanism. cis-Zeatin and its derivatives were found to be the most abundant CKs in young maize seedlings. We demonstrate that levels of this zeatin isomer are significantly enhanced during early stress response and that it originates independently from de novo biosynthesis in stressed tissues, possibly by elevated specific RNA degradation. By enhancing their CK levels, plants could perhaps undergo a reduction of growth rates maintained by abscisic acid accumulation in stressed tissues. A second role for cytokinin receptors in sensing turgor response is hypothesized besides their documented function in CK signaling.Plant physiology 08/2009; 151(1):433-47. · 6.53 Impact Factor
About
Cis or trans. That's what matters.
I'm currently enrolled in PhD study major biochemistry at the Palacky University. Throughout my short academic life I was involved in research of plant hormones cytokinins but recently I'm more focusing on the protein science.