Tom Lynch

Bachelor of Arts
Uniersity of Iowa · Anatomy and Cell Biolog

I am a PhD candidate at the University of Iowa Anatamoy and Cell Biology program following an emphasis in gene therapy and molecular medicine.

Research interests

  • Interests
    In vivo RNA interference, Gene Therapy, and molecular medicine.

Research experience

  • Teaching: and provided instrument training workshops for chemistry majors. I also tutored several students from September 2007 to May 2008 in both chemistry and biology. Teaching is immensely rewarding and obtaining a professorship is one of my ultimate career goals.
  • Teaching: As a Chemistry Laboratory Assistant (June 2006 - May 2008) I assisted laboratory instruction and helped students learn the basics of chemical research and technique. I assisted general chemistry
  • Teaching: organic chemistry
  • Teaching: nursing organic chemistry
  • Aug 2009
    Research: Stem/progenitors of the conducting airway epithelium
    University of Iowa · Anatomy and Cell Biology · University of Iowa
    John F. Engelhardt · Iowa City
  • May 2008–
    Aug 2008
    Research: Protien Scafolding for Tissue Engineering and Stem Cell Research
    AlphaGenix Inc.
    United States · Sioux Falls
    Biomedical Sciences
  • Jun 2007–
    Aug 2007
    Research: examining the sythesis of a Greener method for Nitroaldol condensations by producing novel aminosilanes
    Augustana College · Chemistry · Augustana College
    Dr. Jetty Duffy-Matzner · Sioux Falls, South Dakota
  • Jun 2006–
    Aug 2006
    Research: Examination of 5J Coupling in 2,5-Disubstituted Dihydrofuroketones
    Augustana College · Chemistry · Augustana College
    Dr. Jetty Duffy-Matzner · Sioux Falls, South Dakota

Education

  • Aug 2009
    University of Iowa
    Gene Therapy and Molecular Medicine · Ph.D.
    USA · Iowa City, Iowa
  • Dec 2006–
    May 2008
    Augustana College
    Chemistry and Biology · Bachelor of Arts
    USA · Sioux Falls

Awards & achievements

  • Jan 2008
    Award: Cum Laude

Other

  • Languages
    English
  • Scientific Memberships
    American Association for the Advancement of Science (2011-Present)
    President of the local chapter (Beta Beta Beta) National Biological Honor Society. Academic year 2007-2008

    Student Affiliate of the American Chemical Society. 2006-2008
  • Other Interests
    Rock climbing, kayaking, canoeing, camping, hiking, golfing, tutoring, reading science fiction novels, reading and writing poetry, Science, Nature, Molecular Therapy, and Cell

Publications

  • 15.39
    Impact points
    CGRP induction in cystic fibrosis airways alters the submucosal gland progenitor cell niche in mice.

    Weiliang Xie, John T Fisher, Thomas J Lynch, Meihui Luo, Turan I A Evans, Traci L Neff, Weihong Zhou, Yulong Zhang, Yi Ou, Nigel W Bunnett, Andrew F Russo, Michael J Goodheart, Kalpaj R Parekh, Xiaoming Liu, John F Engelhardt

    The Journal of clinical investigation. 08/2011; 121(8):3144-58.

    In cystic fibrosis (CF), a lack of functional CF transmembrane conductance regulator (CFTR) chloride channels causes defective secretion by submucosal glands (SMGs), leading to persistent bacterial infection that damages airways and necessitates tissue repair. SMGs are also important niches for slow... [more] In cystic fibrosis (CF), a lack of functional CF transmembrane conductance regulator (CFTR) chloride channels causes defective secretion by submucosal glands (SMGs), leading to persistent bacterial infection that damages airways and necessitates tissue repair. SMGs are also important niches for slow-cycling progenitor cells (SCPCs) in the proximal airways, which may be involved in disease-related airway repair. Here, we report that calcitonin gene-related peptide (CGRP) activates CFTR-dependent SMG secretions and that this signaling pathway is hyperactivated in CF human, pig, ferret, and mouse SMGs. Since CGRP-expressing neuroendocrine cells reside in bronchiolar SCPC niches, we hypothesized that the glandular SCPC niche may be dysfunctional in CF. Consistent with this hypothesis, CFTR-deficient mice failed to maintain glandular SCPCs following airway injury. In wild-type mice, CGRP levels increased following airway injury and functioned as an injury-induced mitogen that stimulated SMG progenitor cell proliferation in vivo and altered the proliferative potential of airway progenitors in vitro. Components of the receptor for CGRP (RAMP1 and CLR) were expressed in a very small subset of SCPCs, suggesting that CGRP indirectly stimulates SCPC proliferation in a non-cell-autonomous manner. These findings demonstrate that CGRP-dependent pathways for CFTR activation are abnormally upregulated in CF SMGs and that this sustained mitogenic signal alters properties of the SMG progenitor cell niche in CF airways. This discovery may have important implications for injury/repair mechanisms in the CF airway.
  • Examination of 5J Coupling in 2,5-disubstituted Dihydrofuroketones

    Tom J. Lynch, Rochelle J. Boote, Jetty L. Duffy-Matzner

    41st Midwest Regional Meeting of the American Chemical Society, Quincy, IL; 10/2006

    Former spectra of novel 2,5-disubstituted dihydrofuroketones have shown interesting 5J coupling. This research will examine the J coupling present in 1-(5-tert-butyl-2-methyl-2,5-dihydrofuran-3-yl) ethanone wherein the ring is substituted with tert-Bu and Me groups. This compd. is synthesized by a v... [more] Former spectra of novel 2,5-disubstituted dihydrofuroketones have shown interesting 5J coupling. This research will examine the J coupling present in 1-(5-tert-butyl-2-methyl-2,5-dihydrofuran-3-yl) ethanone wherein the ring is substituted with tert-Bu and Me groups. This compd. is synthesized by a variety of reactions including Henry Addn., acetylation, deacetylation, Grignard reaction, Michael Addn., and Intramol. Silyl Nitronate Cycloaddn. (ISNC). Examn. of the steric effects of the various substituted functional groups will allow further assessment of the 5J coupling.

Following (16)

  • Michael Milsom
    Universität Heidelberg
  • Hannes Klump
    Universitätsklinikum Essen
  • Joanna Buks
    Institute Polish Mother’s Memorial Hospital, Łódź, Poland, Gynaecological- Obstetric University Hospital, Department of Mother`s and Child Health, Poznan University of Medical Science,Poland
  • Dr. Sasidhar B. S.
    Gulbarga University
  • Rigoberto Chaves
    Department of Health, Tabuleiro do Norte
2
Publications
56
Followers
Current advisors
John F. Engelhardt