Skills (5)
Research experience
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Dec 2009–
Apr 2010Research: Identification of oral cancer drug targets
Christ College, Rajkot · Department of BioinformaticsIndia · RajkotDeveloping pathway studies for oral cancer and using pytochemicals as potential drug.
Education
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Jun 2010–
Apr 2012C.M.S COllege of Science and commerce
Bioinformatics · MScIndia · Coimbatore
Other
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LanguagesENglish , Hindi, Gujarati, Malayalam
Questions and Answers (9) View all
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Answer added in Bioinformatic Tools2 Putative vaccine candidates have been found, which tools will can be used for functional annotation?Thank you sir for the tool, and the tool uses domains? We arent we getting good domains for prediction and thus not able to use the tool. Therefore th... [more]
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Question asked in Bioinformatic Tools2 Putative vaccine candidates have been found, which tools will can be used for functional annotation?I have tried using Phyre2, pfam protfun, pfp, interproscan, cdd, cognitor pdbblast, tmhmm but they are not giving significant results. As I am working... [more]
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Answer added in Bioinformatic Tools14 Choosing an alignment algorithmMay be you could try cd hit , http://bioinformatics.org/cd-hit/...
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Answer added in Genetic Algorithm11 Whats the best software to process Genetic Algorithm?Am not sure whether this link may help .. but u can try :) http://www.wardsystems.com/genehunter.asp
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Answer added in Bioinformatics and Computational Biology9 Is there any open source chemical file format converter with batch conversion module other than open babel?http://www.chemaxon.com/products/marvin/molconverter/ and http://www.chemaxon.com/products/marvin/marvinsketch/
Publications (1) View all
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Article: HaloBase: development of database system for halophilic bacteria and archaea with respect to proteomics, genomics & other molecular traits
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ABSTRACT: This study presents HaloBase, a specialized genome database for halophilic bacteria and archaea, which covers molecular aspects and diversity based studies. In HaloBase, 23 organisms were selected and integrated their detailed information consisting more than 55,000 genes, about 50,000 proteins with the functionality to view its 3D structure and about 1,000 structural RNAs. The database, available at http://halobase.info, will provide a platform for storage and analysis of halophiles for research and commercial purposes. Introduction Extremophiles, in general, hold secret about the molecular evolution of life and are being explored from both microbial diversity and biotechnological standpoint 1,2 . Halophilic microbes are one of the most widely studied groups of extremophiles. Over the years, authors have been involved with the halophlic/haloalkaliphilic bacteria from saline habitats of coastal Gujarat, exploring diver-sity, phylogeny, enzymatic profiling and properties of extracellular enzymes 3-10 . In addition to haloalkaliphilic bacteria, salt-tolerant alkaliphilic actinomycetes are also being explored with respect to their diversity and biotechnological potential 11-16 . In recent years, attention is being focused on the entire community of ecological niche using metagenomic approaches 17-20 . This study presents creation of HaloBase database system for halophilic bacteria and archaea, which would be useful to researchers working in microbiology and molecular biology focusing on genes and proteins. HaloBase reflects exhaustive diversity and functional analysis of saline system. Methodology HaloBase contains range of information about genes, proteins, RNAs, genome sequence, protein structure,Journal of scientific and industrial research 12/2011; 70:976-981. · 0.59 Impact Factor
