Publications (13) View all
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Article: Theoretical Study on Water-Mediated Excited-State Multiple Proton Transfer in 7-Azaindole: Significance of Hydrogen Bond Rearrangement.
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ABSTRACT: Excited-state multiple proton transfer (ESMPT) in the cluster of 7-azaindole with three water molecules [7-azaindole(H(2)O)(3)] is theoretically investigated by the TDDFT, CASPT2, and CC2 methods. Examination of the potential energy surface in the first excited state indicates that ESMPT in 7-azaindole(H(2)O)(3) proceeds initially with the rearrangement of hydrogen bond structure of water molecules from a bridged-planar isomer to a cyclic-nonplanar isomer, followed by triple proton transfer in the latter. This reaction is found to be energetically more favorable than quadruple proton transfer in the bridged-planar isomer without hydrogen bond reorganization. It is also shown that all proton-transfer processes follow a concerted mechanism rather than a stepwise mechanism. The computational results show good consistency with the unexpected experimental observations as to the electronic spectra and excited-state lifetime. In particular, the barrier of the hydrogen bond rearrangement is found to be less than 1 kcal/mol, consistent with the missing vibronic bands for 7-azaindole(H(2)O)(3) with an excess energy of more than 200 cm(-1) in the S(1) state.The Journal of Physical Chemistry A 10/2012; · 2.95 Impact Factor -
Article: Photoreaction channels of the guanine-cytosine base pair explored by long-range corrected TDDFT calculations.
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ABSTRACT: Photoinduced processes in the Watson-Crick guanine-cytosine base pair are comprehensively studied by means of long-range corrected (LC) TDDFT calculations of potential energy profiles using the LC-BLYP and CAM-B3LYP functionals. The ab initio CC2 method and the conventional TDDFT method with the B3LYP functional are also employed to assess the reliability of the LC-TDDFT method. The present approach allows us to compare the potential energy profiles at the same computational level for excited-state reactions of the base pair, including single and double proton transfer between the bases and nonradiative decay via ring puckering in each base. In particular, long-range correction to the TDDFT method is critical for a qualitatively correct description of the proton transfer reactions. The calculated energy profiles exhibit low barriers for out-of-plane deformation of the guanine moiety in the locally-excited state, which is expected to lead to a conical intersection with the ground state, as well as for single proton transfer from guanine to cytosine with the well-known electron-driven proton transfer mechanism. Thus the present results suggest that both processes can compete in hydrogen-bonded base pairs and play a significant role in the mechanism of photostability.Physical Chemistry Chemical Physics 05/2012; 14(25):8866-77. · 3.57 Impact Factor -
Article: Theoretical study of the excited-state double proton transfer in the (3-methyl-7-azaindole)-(7-azaindole) heterodimer.
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ABSTRACT: Excited-state double proton transfer (ESDPT) in the (3-methyl-7-azaindole)-(7-azaindole) heterodimer is theoretically investigated by the long-range corrected time-dependent density functional theory method and the complete-active-space second-order perturbation theory method. The calculated potential energy profiles exhibit a lower barrier for the concerted mechanism in the locally excited state than for the stepwise mechanism through the charge-transfer state. This result suggests that the ESDPT in the isolated heterodimer is likely to follow the former mechanism, as has been exhibited for the ESDPT in the homodimer of 7-azaindole.Journal of Computational Chemistry 05/2012; 33(20):1701-8. · 4.58 Impact Factor -
Article: Nonradiative deactivation mechanisms of uracil, thymine, and 5-fluorouracil: a comparative ab initio study.
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ABSTRACT: The mechanisms of the ultrafast nonradiative deactivation of uracil and its substituted derivatives thymine (5-methyluracil) and 5-fluorouracil after absorption of UV light are explored and compared by means of ab initio multistate (MS) CASPT2 calculations. The MS-CASPT2 method is applied for the calculation of potential energy profiles, especially for the geometry optimization in the electronically excited state, with the aim of an accurate prediction of deactivation pathways. The resulting energy curves of each molecule exhibit that the conical intersection between the (1)ππ* and ground states is accessible via small energy barriers from the minimum in the (1)ππ* state as well as from that in the (1)nπ* state. The barrier of 5-fluorouracil in the (1)ππ* state is calculated to be definitely higher than those of uracil and thymine, which is consistent with experiments and suggests that the elongation of the excited-state lifetime of uracil by fluorine substitution is significantly contributed from intrinsic electronic effect of the molecule. However, no evidence of the experimentally observed longer excited-state lifetime of thymine than uracil is found in the presently calculated MS-CASPT2 potential energy curves in the (1)ππ* and (1)nπ* states, implying nonnegligible contribution of other factors such as solvation effect and substituent mass to the photoinduced dynamics of uracil derivatives.The Journal of Physical Chemistry A 12/2011; 116(1):491-503. · 2.95 Impact Factor -
Article: Concerted or Stepwise Mechanism? CASPT2 and LC-TDDFT Study of the Excited-State Double Proton Transfer in the 7-Azaindole Dimer
Journal of Chemical Theory and Computation 03/2011; 7(4):1006–1015. · 5.22 Impact Factor
