Shashi Singh |
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Ph.D
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Centre for Cellular and Molecular Biology
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Centre for Cellular and Molecular Biology (Council of Scientific and Industrial Research)
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31.36
Skills (7)
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173 Questions12612 Followers
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62 Questions2170 Followers
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156 Questions12154 Followers
Education
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Aug 1982–
Mar 1988Delhi University
Ph.DIndia
Other
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LanguagesHindi, English
Questions and Answers (15) View all
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Answer added in Mesenchymal7 How can I isolate umbilical cord mesenchymal stem cells?By Cong Liu · Beijing Genomics InstituteShashi Singh · Centre for Cellular and Molecular BiologyAdd a mucolytic enzyme also like hyaluronidase and collagenase is enough for 1 hr. also to get good yield.Add a mucolytic enzyme also like hyaluronidase and collagenase is enough for 1 hr. also to get good yield.Following
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Answer added in Mesenchymal7 How can I isolate umbilical cord mesenchymal stem cells?By Cong Liu · Beijing Genomics InstituteShashi Singh · Centre for Cellular and Molecular BiologyAdd a mucolytic enzyme for better yield and less viscosity. the timing can be reduced to one hours also. sAdd a mucolytic enzyme for better yield and less viscosity. the timing can be reduced to one hours also. sFollowing
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Answer added in Cell Viability Assay30 Reliable and proven method to analyze cell viability and proliferation in culture by microscopy?By Gontzal García del Caño · Universidad del País Vasco / Euskal Herriko UnibertsitateaShashi Singh · Centre for Cellular and Molecular BiologyVery good link George, I would just add another assay - proliferation using CFSE.Very good link George, I would just add another assay - proliferation using CFSE.Following
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Answer added in Microscopy5 Does anyone have a sucessful immunogold pre-embedding labeling procedure for transmission electron microscopy? IBy Jackie Williams · St. Jude Children's Research HospitalShashi Singh · Centre for Cellular and Molecular BiologyPreembedding is good if you are looking for surface antigens. For internal antigens, you need permeabilization properly that usually is not very good ... [more]Preembedding is good if you are looking for surface antigens. For internal antigens, you need permeabilization properly that usually is not very good for structures. You can follow this flow, fixation-thick sections-immunostaining-osmification-plastic embedding-sectionig TEM.Do immunostaining with permeabilzation and go ahead with embedding procedures using any resin (you are confortable with) do sectioning, staining (only lead citrate is good enough) and scanning as usual.Following
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Answer added in Stem Cell Biology4 Dear Researchers, I am looking for a more explanation into the following area: Human oocytes reprogram somatic cells to a pluripotent stateBy Gaurab Banerjee · Sandor ProteomicsShashi Singh · Centre for Cellular and Molecular BiologyYes the oocytes do have all the transcription factors required for state conversion. Look at the protocols where they have used protein transfections ... [more]Yes the oocytes do have all the transcription factors required for state conversion. Look at the protocols where they have used protein transfections or rna transfection of pluripotency factors to reprogram cells.Following
Publications (44) View all
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Article: Evaluation of nano-biphasic calcium phosphate ceramics for bone tissue engineering applications: In vitro and preliminary in vivo studies.
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ABSTRACT: Reconstruction of critical sized bone injuries is a major problem that continues to inspire the design of new materials and grafts. Natural ceramics (hydroxyapatite (HA) coralline HA, or synthetic HA) and β-tricalcium phosphate (β-TCP) are being explored for use as scaffolds in bone tissue engineering, among several other materials. The present study evaluated the bone forming capacity of nanosize bioceramics synthesized in situ in poly-vinyl alcohol (PVA) with different ratios of HA and β-TCP; the Ca/P ratio was 1.62 for bioceramic P1, 1.60 for P2 and 1.58 for P3. Further osteogenesis in vitro with mesenchymal stem cells (MSC) acquired from different sources for osteogenesis in vitro and their bone healing properties in vivo were also evaluated. MSC isolated from human placenta, Wharton's jelly from umbilical cord, fetal bone marrow and adipose tissue, cultured in the presence of nanosize bioceramic particles, were monitored for osteogenic differentiation. Placental cells showed the best osteogenic potential of the different MSC studied on the basis of expression of osteogenic markers. Complete regeneration of the damaged region was observed in vivo when MSC derived from placenta were used with nanoceramic (Ca/P ratio 1.58) in the experimental defect created in the femur of Wistar rats. Even small variation in the Ca/P ratio can alter the outcome of tissue constructs.Journal of Biomaterials Applications 01/2012; · 2.08 Impact Factor -
Article: Poly(L-Lysine)-pyranine-3 coacervate mediated nanoparticle-assembly: fabrication of dynamic pH-responsive containers.
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ABSTRACT: Counter-ion condensation of Poly(L-Lysine) in the presence of pyranine-3 generates spherical coacervates, which then template the assembly of silica nanoparticles to form microcapsule structures that dynamically control the optical ratiometric sensing of both the change in pH and release of the probe molecule.Chemical Communications 11/2011; 48(6):856-8. · 6.17 Impact Factor -
SourceAvailable from: Ashutosh Kumar
Article: TiO(2) nanoparticles induce oxidative DNA damage and apoptosis in human liver cells.
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ABSTRACT: Abstract Titanium dioxide nanoparticles (TiO(2) NPs), widely used in consumer products, paints, pharmaceutical preparations and so on, have been shown to induce cytotoxicity, genotoxicity and carcinogenic responses in vitro and in vivo. The present study revealed that TiO(2) NPs induce significant (p < 0.05) oxidative DNA damage by the Fpg-Comet assay even at 1 µg/ml concentration. A corresponding increase in the micronucleus frequency was also observed. This could be attributed to the reduced glutathione levels with concomitant increase in lipid peroxidation and reactive oxygen species generation. Furthermore, immunoblot analysis revealed an increased expression of p53, BAX, Cyto-c, Apaf-1, caspase-9 and caspase-3 and decreased the level of Bcl-2 thereby indicating that apoptosis induced by TiO(2) NPs occurs via the caspase-dependent pathway. This study systematically shows that TiO(2) NPs induce DNA damage and cause apoptosis in HepG2 cells even at very low concentrations. Hence the use of such nanoparticles should be carefully monitored.Nanotoxicology 11/2011; · 5.76 Impact Factor -
SourceAvailable from: ns1.ias.ac.in
Article: Aggregation properties of a short peptide that mediates amyloid fibril formation in model proteins unrelated to disease.
Nitin Chaudhary, Shashi Singh, Ramakrishnan Nagaraj[show abstract] [hide abstract]
ABSTRACT: Short peptides have been identified from amyloidogenic proteins that form amyloid fibrils in isolation. The hexapeptide stretch ²¹DIDLHL²⁶ has been shown to be important in the self-assembly of the Src homology 3 (SH3) domain of p85 alpha subunit of bovine phosphatidylinositol-3-kinase (PI3-SH3). The SH3 domain of chicken brain alpha- spectrin, which is otherwise non-amyloidogenic, is rendered amyloidogenic if ²²EVTMKK²⁷ is replaced by DIDLHL. In this article, we describe the aggregation behaviour of DIDLHL-COOH and DIDLHL-CONH₂. Our results indicate that DIDLHL-COOH and DIDLHL-CONH₂ aggregate to form spherical structures at pH 5 and 6. At pH 5, in the presence of mica, DIDLHL-CONH₂ forms short fibrous structures. The presence of NaCl along with mica results in fibrillar structures. At pH 6, DIDLHL-CONH₂ forms largely spherical aggregates. Both the peptides are unstructured in solution but adopt beta-conformation on drying. The aggregates formed by DIDLHL-COOH and DIDLHL-CONH₂ are formed during drying process and their structures are modulated by the presence of mica and salt. Our study suggests that a peptide need not have intrinsic amyloidogenic propensity to facilitate the selfassembly of the full-length protein. The propensity of peptides to form self-assembled structures that are nonamyloidogenic could be important in potentiating the self-assembly of full-length proteins into amyloid fibrils.Journal of Biosciences 09/2011; 36(4):679-89. · 1.65 Impact Factor -
Article: ROS-mediated genotoxicity induced by titanium dioxide nanoparticles in human epidermal cells.
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ABSTRACT: Titanium dioxide nanoparticles (TiO(2) NPs) are among the top five NPs used in consumer products, paints and pharmaceutical preparations. Since, exposure to such nanoparticles is mainly through the skin and inhalation, the present study was conducted in the human epidermal cells (A431). A mild cytotoxic response of TiO(2) NPs was observed as evident by the MTT and NR uptake assays after 48 h of exposure. However, a statistically significant (p<0.05) induction in the DNA damage was observed by the Fpg-modified Comet assay in cells exposed to 0.8 μg/ml TiO(2) NPs (2.20±0.26 vs. control 1.24±0.04) and higher concentrations for 6 h. A significant (p<0.05) induction in micronucleus formation was also observed at the above concentration (14.67±1.20 vs. control 9.33±1.00). TiO(2) NPs elicited a significant (p<0.05) reduction in glutathione (15.76%) with a concomitant increase in lipid hydroperoxide (60.51%; p<0.05) and reactive oxygen species (ROS) generation (49.2%; p<0.05) after 6h exposure. Our data demonstrate that TiO(2) NPs have a mild cytotoxic potential. However, they induce ROS and oxidative stress leading to oxidative DNA damage and micronucleus formation, a probable mechanism of genotoxicity. This is perhaps the first study on human skin cells demonstrating the cytotoxic and genotoxic potential of TiO(2) NPs.Toxicology in Vitro 02/2011; 25(1):231-41. · 2.78 Impact Factor