| a |
| a |
| a |
| a |
38.33
Skills (10)
-
31 Questions185 Followers
-
30 Questions959 Followers
-
3 Questions39 Followers
-
217 Questions11174 Followers
-
5 Questions54 Followers
-
34 Questions70 Followers
-
34 Questions375 Followers
-
32 Questions2216 Followers
-
85 Questions4583 Followers
-
1 Question20 Followers
Research experience
-
Jan 2010–
presentResearch: Protein vaccine for Streptococcus pneumoniae
St. Jude Children's Hospital · Infectious DiseasesUSA · MemphisSmall scale production of antigens for preliminary testing. Scale up of fermentation and purification to multi-gram levels with concomitant development of processes suitable for deployment in a cGMP. -
Feb 1993–
presentResearch: St. Jude Children's Research Hospital
St. Jude Children's Research Hospital · Department of Infectious DiseasesUSA · Memphis
Education
-
Sep 1988–
Dec 1991University of Oxford
Molecular biology/Biochemistry · D.PhilUnited Kingdom · Oxford -
Sep 1984–
Jun 1988The University of Warwick
Biochemistry · BSc(Hons)United Kingdom · Warwick
Other
-
LanguagesEnglish
Little bit of French and German -
Scientific MembershipsABRF, AAAS
-
Journal RefereesBioTechniques
-
Other InterestsYeast fermentation for the production of optimum ester profiles and alcohol production (i.e. homebrewing beer)
Questions and Answers (34) View all
-
Answer added in Recombinant Proteins Production & Purification5 What kind of protease inhibitor can I use in protein extraction without inhibition of the binding of his-tag on Ni2+ ion during purification?By Abdallah Hamieh · Université de RouenRichard Heath · St. Jude Children's Research HospitalAnything that chelates metals can interfere with metal chelation affinity chromatography and are best avoided altogether, if possible. If you sure th... [more]Anything that chelates metals can interfere with metal chelation affinity chromatography and are best avoided altogether, if possible. If you sure that the degradation is being caused by a metalloproteinase, EDTA or EGTA can be used at low concentrations in some situations - you'd have to test them with your particular set up. In general, make sure you are working quickly with everything on ice to minimize the contact between proteases and your protein of interest. Maybe consider checking the time at which you are harvesting your cells - a shorter induction period could possibly yield a lower amount of your protein of interest, but also less proteases, thus actually increasing the yield of non-degraded material. If you absolutely have to have high concentrations of chelators present to stabilize your protein, then consider a different tag.Following
-
Answer added in Escherichia coli6 In E.coli, if every cell divides into half by binary fission, which cells exactly die?By Vishnu Kanth · University of MysoreRichard Heath · St. Jude Children's Research HospitalHave you never grown an overnight culture of E. coli, then taken an aliquot and diluted it into fresh media the next day and let them grow? If you ha... [more]Have you never grown an overnight culture of E. coli, then taken an aliquot and diluted it into fresh media the next day and let them grow? If you have, you have taken cells from a stationary phase culture and re-introduced them to log phase. The attached link is just something I found by Google that explains bacterial growth cycles. It should be noted that the length of time a specific strain will spend in stationary phase before it enters the death phase will depend on the strain, broth conditions, temperature etc. A microbiology textbook may provide more details.http://textbookofbacteriology.net/growth_3.html ×
Growth of Bacterial Populations
Todar's Online Textbook of Bacteriology discusses the methods for measuring bacterial, growth of bacterial populations, and the bacterial growth curve.
Following -
Answer added in Recombinant Proteins Production & Purification5 What kind of protease inhibitor can I use in protein extraction without inhibition of the binding of his-tag on Ni2+ ion during purification?By Abdallah Hamieh · Université de RouenRichard Heath · St. Jude Children's Research HospitalBasically you can use anything except EDTA. We use Roche EDTA-free tabletsBasically you can use anything except EDTA. We use Roche EDTA-free tabletsFollowing
-
Answer added in Proteins5 Can anyone tell me the interpretation of the following protein names?By Xiaojing Sui · Chinese Academy of SciencesRichard Heath · St. Jude Children's Research HospitalIn addition to what Yakov Koen said, you also need to know how the database searching software works. It is going to pull up the best match to the ob... [more]In addition to what Yakov Koen said, you also need to know how the database searching software works. It is going to pull up the best match to the obtained fragments, and report that. If only the precursor form of the protein is in the database, it will give you that based on the score, although your specific protein may be the processed (mature) form. To determine if you have a processed form or not, different methods will need to be used (e.g. time of flight mass spec, N-terminal sequencing).Following
-
Answer added in Spectrometry4 How am I going to prepare a solution (aqueous) that contains a known concentration of E. coli?By Ivan Bastasa · Mindanao State University - Iligan Institute of TechnologyRichard Heath · St. Jude Children's Research HospitalThe optical density of the culture at 600 nm can be used as an indirect measure of the cell density at any given time. Just make sure you dilute the ... [more]The optical density of the culture at 600 nm can be used as an indirect measure of the cell density at any given time. Just make sure you dilute the sample in media before measuring so that the reading on the spectrophotometer is below about 0.6 OD. OD readings become non-linear after this point, due to light scattering. If you need to know the actual cell number at any given OD reading, you will need to plate them as suggested by Navjyoti Chakraborty, and plot OD vs cell number. Different strains of E. coli give different readings, so you need to do this for the strain you are using.Following
Publications (39) View all
-
Article: Inhibitors of fatty acid synthesis as antimicrobial chemotherapeutics.
[show abstract] [hide abstract]
ABSTRACT: Fatty acid biosynthesis is an emerging target for the development of novel antibacterial chemotherapeutics. The dissociated bacterial system is substantially different from the large, multifunctional protein of mammals, and many possibilities exist for type-selective drugs. Several compounds, both synthetic and natural, target bacterial fatty acid synthesis. Three compounds target the FabI enoyl-ACP reductase step; isoniazid, a clinically used antituberculosis drug, triclosan, a widely used consumer antimicrobial, and diazaborines. In addition, cerulenin and thiolactomycin, two fungal products, inhibit the FabH, FabB and FabF condensation enzymes. Finally, the synthetic reaction intermediates BP1 and decynoyl- N-acetyl cysteamine inhibit the acetyl-CoA carboxylase and dehydratase isomerase steps, respectively. The mechanisms of action of these compounds, as well as the potential development of new drugs targeted against this pathway, are discussed.Applied Microbiology and Biotechnology 06/2002; 58(6):695-703. · 3.42 Impact Factor -
SourceAvailable from: Richard J Heath
Article: The licC gene of Streptococcus pneumoniae encodes a CTP:phosphocholine cytidylyltransferase.
[show abstract] [hide abstract]
ABSTRACT: The licC gene product of Streptococcus pneumoniae was expressed and characterized. LicC is a nucleoside triphosphate transferase family member and possesses CTP:phosphocholine cytidylyltransferase activity. Phosphoethanolamine is a poor substrate. The LicC protein plays a role in the biosynthesis of the phosphocholine-derivatized cell wall constituents that are critical for cell separation and pathogenesis.Journal of Bacteriology 09/2001; 183(16):4927-31. · 3.83 Impact Factor -
Article: The FadR.DNA complex. Transcriptional control of fatty acid metabolism in Escherichia coli.
[show abstract] [hide abstract]
ABSTRACT: In Escherichia coli, the expression of fatty acid metabolic genes is controlled by the transcription factor, FadR. The affinity of FadR for DNA is controlled by long chain acyl-CoA molecules, which bind to the protein and modulate gene expression. The crystal structure of FadR reveals a two domain dimeric molecule where the N-terminal domains bind DNA, and the C-terminal domains bind acyl-CoA. The DNA binding domain has a winged-helix motif, and the C-terminal domain resembles the sensor domain of the Tet repressor. The FadR.DNA complex reveals how the protein interacts with DNA and specifically recognizes a palindromic sequence. Structural and functional similarities to the Tet repressor and the BmrR transcription factors suggest how the binding of the acyl-CoA effector molecule to the C-terminal domain may affect the DNA binding affinity of the N-terminal domain. We suggest that the binding of acyl-CoA disrupts a buried network of charged and polar residues in the C-terminal domain, and the resulting conformational change is transmitted to the N-terminal domain via a domain-spanning alpha-helix.Journal of Biological Chemistry 06/2001; 276(20):17373-9. · 4.77 Impact Factor -
Article: Identification and analysis of the acyl carrier protein (ACP) docking site on beta-ketoacyl-ACP synthase III.
[show abstract] [hide abstract]
ABSTRACT: The molecular details that govern the specific interactions between acyl carrier protein (ACP) and the enzymes of fatty acid biosynthesis are unknown. We investigated the mechanism of ACP-protein interactions using a computational analysis to dock the NMR structure of ACP with the crystal structure of beta-ketoacyl-ACP synthase III (FabH) and experimentally tested the model by the biochemical analysis of FabH mutants. The activities of the mutants were assessed using both an ACP-dependent and an ACP-independent assay. The ACP interaction surface was defined by mutations that compromised FabH activity in the ACP-dependent assay but had no effect in the ACP-independent assay. ACP docked to a positively charged/hydrophobic patch adjacent to the active site tunnel on FabH, which included a conserved arginine (Arg-249) that was required for ACP docking. Kinetic analysis and direct binding studies between FabH and ACP confirmed the identification of Arg-249 as critical for FabH-ACP interaction. Our experiments reveal the significance of the positively charged/hydrophobic patch located adjacent to the active site cavities of the fatty acid biosynthesis enzymes and the high degree of sequence conservation in helix II of ACP across species.Journal of Biological Chemistry 04/2001; 276(11):8231-8. · 4.77 Impact Factor -
SourceAvailable from: Richard J Heath
Article: Inhibition of beta-ketoacyl-acyl carrier protein synthases by thiolactomycin and cerulenin. Structure and mechanism.
[show abstract] [hide abstract]
ABSTRACT: The beta-ketoacyl-acyl carrier protein (ACP) synthases are key regulators of type II fatty acid synthesis and are the targets for two natural products, thiolactomycin (TLM) and cerulenin. The high resolution structures of the FabB-TLM and FabB-cerulenin binary complexes were determined. TLM mimics malonyl-ACP in the FabB active site. It forms strong hydrogen bond interactions with the two catalytic histidines, and the unsaturated alkyl side chain interaction with a small hydrophobic pocket is stabilized by pi stacking interactions. Cerulenin binding mimics the condensation transition state. The subtle differences between the FabB-cerulenin and FabF-cerulenin (Moche, M., Schneider, G., Edwards, P., Dehesh, K., and Lindqvist, Y. (1999) J. Biol. Chem. 244, 6031-6034) structures explain the differences in the sensitivity of the two enzymes to the antibiotic and may reflect the distinct substrate specificities that differentiate the two enzymes. The FabB[H333N] protein was prepared to convert the FabB His-His-Cys active site triad into the FabH His-Asn-Cys configuration to test the importance of the two His residues in TLM and cerulenin binding. FabB[H333N] was significantly more resistant to both antibiotics than FabB and had an affinity for TLM an order of magnitude less than the wild-type enzyme, illustrating that the two-histidine active site architecture is critical to protein-antibiotic interaction. These data provide a structural framework for understanding antibiotic sensitivity within this group of enzymes.Journal of Biological Chemistry 04/2001; 276(9):6551-9. · 4.77 Impact Factor
About
I run a protein production facility for St Jude investigators. We utilize bacteria, insect cells and mammalian cells on scales of < 1 L to 120 L. Protein purification is performed with AKTAs either using tags or conventional chromatography. I also work on process development for projects moving to a cGMP.