Amy Wafa Daali

Questions and Answers (8) View all

• Answer added in Bioinformatics and Computational Biology
  6 Comparing Biological Pathways
  By Amy Wafa Daali · University of Texas at San Antonio
  Amy Wafa Daali · University of Texas at San Antonio

  Thank you all for your feedback & comments! 

  Thank you all for your feedback & comments!
  Following
• Answer added in Bioinformatics and Computational Biology
  6 Comparing Biological Pathways
  By Amy Wafa Daali · University of Texas at San Antonio
  Amy Wafa Daali · University of Texas at San Antonio

  Thank you Rajashri , I wil give it a try! 

  Thank you Rajashri , I wil give it a try!
  Following
• Answer added in Bioinformatics and Computational Biology
  6 Comparing Biological Pathways
  By Amy Wafa Daali · University of Texas at San Antonio
  Amy Wafa Daali · University of Texas at San Antonio

  Sorry for not being so specific, the data is mRNA time series microarray data derived from virus infection of human cells collected at different times... [more]

  Sorry for not being so specific, the data is mRNA time series microarray data derived from virus infection of human cells collected at different times t=[0 1 3...]. Where time 0hr is the Control data (no virus infection). I'm looking at the fold ratio change of 1hr/0hr , 3hr/0hr ... I end up having pathways with these log2(ratio). I'm trying to find a metric to compare these pathways since taking the average of all fold changes within a pathway dosen't really make sense. Since in a single pathway, we can have genes that are upregulated and others that are downregulated...I'm looking for a reliable score that reflects the status of each pathway.
  Following
• Question asked in Bioinformatics and Computational Biology
  6 Comparing Biological Pathways
  Does anyone know how to compare between different biological pathways with different sizes and different log2 Ratio values? Say I have : pathway 1 =[... [more]
  Does anyone know how to compare between different biological pathways with different sizes and different log2 Ratio values? Say I have : pathway 1 =[ 5 3 2 -0.1 -0.01 -0.2 0.6 0.5 ] pathway 2=[ 5 3 2 -0.1] A positive value means a gene is upregulated whereas a negative value means a gene is downregulated.
  By Amy Wafa Daali · University of Texas at San Antonio
  Following
• Answer added in Gene Regulation
  3 KSHV-Host Interaction database?
  By Amy Wafa Daali · University of Texas at San Antonio
  Amy Wafa Daali · University of Texas at San Antonio

  Thank you for your help! 

  Thank you for your help!
  Following