Topics (48) View all

Skills (36)

Research experience

  • Jan 2011–
    present
    Research: Principal investigator
    Università di Bologna · Department of Experimental, Diagnostic and Specialty Medicine (DIMES) · Start-Up unit (AIRC)
    Italy · Bologna
    PI of a research unit supported by the Italian Association for Cancer Research (http://www.airc.it). Research activities: chemoinformatic and computer-aided drug design techniques for the discovery of new anticancer therapeutics.
  • Jan 2009–
    Dec 2010
    Research: Principal investigator
    Università degli Studi di Modena e Reggio Emilia · Dipartimento di Scienze Farmaceutiche · Start-Up unit (AIRC)
    Italy · Modena
    PI of a research unit supported by the Italian Association for Cancer Research (http://www.airc.it). Research activities: chemoinformatic and computer-aided drug design techniques for the discovery of new anticancer therapeutics.
  • Jan 2008–
    Dec 2008
    Research: Post-doc
    Università degli studi di Modena e Reggio Emilia · Dipartimento di Scienze Farmaceutiche · Giulio Rastelli
    Italy · Modena
    Worked on the design of irreversible inhibitors of protein kinases using molecular dynamics simulations and MM-PBSA free energy estimations
  • Nov 2007–
    Dec 2007
    Research: Research scientist
    Molecular Networks
    Germany · Erlangen
    Spent a short time at Mol-Net working on the stability of compound libraries and their reaction mechanisms
  • Jan 2006–
    Oct 2007
    Research: Post-doc
    Friedrich-Alexander Universität Erlangen-Nürnberg · Computer-Chemie-Centrum · Johnny Gasteiger
    Germany · Erlangen
    Got an Alexander von Humboldt fellowships and worked of enantioselective recognition mechanisms with chemoinformatic tools.
  • Jun 2003–
    Jun 2003
    Research: Research training
    anterio consult & research gmbh
    Germany · Mannheim
    Hard training on Schrödinger software. Worked on computational elucidation of enantioselective recognition mechanisms (mainly chiral HPLC separations).

Education

  • Jan 2003–
    Dec 2005
    Aix-Marseille Université
    Computational chemistry and bioactive molecules · PhD
    France · Marseille
  • Sep 2001–
    Jun 2002
    Université de Rennes 1
    Theoretical chemistry and computer sciences · Master in theoretical chemistry and computer sciences
    France · Rennes
  • Sep 1997–
    Feb 2002
    Università degli studi di Modena e Reggio Emilia
    Physical and theoretical chemistry · Master in physical chemistry
    Italy · Modena

Other

  • Languages
    Italian, English, French and low level of proficiency in German
  • Scientific Memberships
    American Chemical Society, Italian Chemical Society, Alexander von Humboldt foundation, Italian Association for Cancer Research
  • Journal Referees
    Chem-Bio Informatics Journal

Questions and Answers (4) View all

  • Answer added in MHC
    3 Where can I buy immunoproteasome inhibitors?
    By Dmitry Bourdetsky · Technion - Israel Institute of Technology
    Alberto Del Rio · University of Bologna
    Of course! Please make a request of full-text from here https://www.researchgate.net/publication/231223187_Immunoproteasome_in_cancer_and_neuropatholo... [more]
  • Answer added in MHC
    3 Where can I buy immunoproteasome inhibitors?
    By Dmitry Bourdetsky · Technion - Israel Institute of Technology
    Alberto Del Rio · University of Bologna
    Do you need selective immunoproteasome inhibitors? (i.e. less or not active against the constitutive proteasome?) Otherwise you can just go for promi... [more]
  • Answer added in Chemistry
    29 Are there any journals dealing with the design and development of software (and methods) for nature science (esp. chemistry)?
    By Sven Kochmann · Universität Regensburg
    Alberto Del Rio · University of Bologna
    Also the J Chem Inf Model (http://pubs.acs.org/journal/jcisd8) publishes a number papers with methodological background 
  • 11 Virtual screening
    By Dipon Das · KIIT University
    Alberto Del Rio · University of Bologna
    As concerning database for freely available databases for virtual screening purposes we recently wrote a review that might be of help http://www.ncbi.... [more]

Publications (29) View all

  • Source
    Article: Cross-talking metabolism and epigenetics in anti-cancer drug design.
    Alberto Del Rio
    Current pharmaceutical design 09/2012; · 4.41 Impact Factor
  • Article: microRNA biogenesis pathway as therapeutic target for human disease and cancer.
    [show abstract] [hide abstract]
    ABSTRACT: The deregulation of miRNAs expression and activity is frequently observed in a wide variety of human pathologies including cancer. Accordingly, growing evidence indicates that the targeting of microRNAs biogenesis and pathways is emerging as a central tool for the development of novel RNA-based drugs and therapies to defeat diseases in humans. In this review we describe the various strategies that can be used to target the microRNAs and specific RNA-binding proteins, involved in the regulation of their production, localization, stability and activity, in human cancer and cardiovascular diseases. We also focus on the efforts that are currently made to enhance the potency and stability of these therapeutic agents and their delivery to modulate in vivo microRNAs pathways. Finally, we present structural data on proteins that belong to the microRNA pathway for small molecules-based target therapy design.
    Current pharmaceutical design 09/2012; · 4.41 Impact Factor
  • Source
    Article: Modulation of epigenetic targets for anticancer therapy: clinicopathological relevance, structural data and drug discovery perspectives.
    [show abstract] [hide abstract]
    ABSTRACT: Research on cancer epigenetics has flourished in the last decade. Nevertheless growing evidence point on the importance to understand the mechanisms by which epigenetic changes regulate the genesis and progression of cancer growth. Several epigenetic targets have been discovered and are currently under validation for new anticancer therapies. Drug discovery approaches aiming to target these epigenetic enzymes with small-molecules inhibitors have produced the first pre-clinical and clinical outcomes and many other compounds are now entering the pipeline as new candidate epidrugs. The most studied targets can be ascribed to histone deacetylases and DNA methyltransferases, although several other classes of enzymes are able to operate post-translational modifications to histone tails are also likely to represent new frontiers for therapeutic interventions. By acknowledging that the field of cancer epigenetics is evolving with an impressive rate of new findings, with this review we aim to provide a current overview of pre-clinical applications of small-molecules for cancer pathologies, combining them with the current knowledge of epigenetic targets in terms of available structural data and drug design perspectives.
    Current pharmaceutical design 09/2012; · 4.41 Impact Factor
  • Source
    Article: Rejuvenating sirtuins: the rise of a new family of cancer drug targets.
    [show abstract] [hide abstract]
    ABSTRACT: Sirtuins are a family of NAD+-dependent enzymes that was proposed to control organismal life span about a decade ago. While such role of sirtuins is now debated, mounting evidence involves these enzymes in numerous physiological processes and disease conditions, including metabolism, nutritional behavior, circadian rhythm, but also inflammation and cancer. SIRT1, SIRT2, SIRT3, SIRT6, and SIRT7 have all been linked to carcinogenesis either as tumor suppressor or as cancer promoting proteins. Here, we review the biological rationale for the search of sirtuin inhibitors and activators for treating cancer and the experimental approaches to their identification.
    Current pharmaceutical design 09/2012; · 4.41 Impact Factor
  • Article: Immunoproteasome in cancer and neuropathologies: a new therapeutic target?
    [show abstract] [hide abstract]
    ABSTRACT: Immunoproteasome is an emerging biological target that constitutes a key element not only in antigen presentation but also in T cell and cytokine regulation as well as cellular homeostasis. Its inducible expression and different sensitivity, respect to standard proteasome, towards activity modulators renders it a potential therapeutic target for tumours and central nervous system diseases. In this review we report the cutting edge studies for understanding when immunoproteasome expression is induced and how it regulates pivotal pathways involved in tumours and neuropathologies, including apoptosis and inflammation. We emphasize its role as a new pharmacological target by describing the recent medicinal chemistry efforts aimed at design selective small-molecule modulators of both standard- and immuno-proteasome forms. Finally, we also present an in silico model of the human immunoproteasome structure by the major molecular differences with the 20S standard proteasome and discuss the perspective for the design of novel specific small-molecule modulators for the different proteasome isoforms.
    Current pharmaceutical design 09/2012; · 4.41 Impact Factor

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