Annual review of plant biology (ANNU REV PLANT BIOL)

Publications in this journal

• Article: Membrane Microdomains, Rafts, and DRM in Plants and Fungi

  Jan Malinsky, Miroslava Opekarová, Guido Grossmann, Widmar Tanner
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  ABSTRACT: Existence of specialized microdomains in plasma membranes, postulated for almost 25 years, has been popularized by the concept of lipid or membrane "rafts". The idea that lipid rafts are equivalent to detergent resistant membranes (DRM), generally abandoned after a decade of vigorous data accumulation, contributed to intense discussions about validity of the raft concept. The existence of membrane microdomains has been verified meanwhile by unequivocal independent evidences. Here the situation in plants and fungi with respect to common aspects of both kingdoms is summarized. In these organisms principally immobile microdomains, large enough for microscopic detection have been visualized. They are found in relation to cell-cell interactions (plant symbionts and pathogens), membrane transport, stress and polarized growth. The data corroborate at least three different mechanisms of membrane microdomain formation. Functional relevance of this lateral compartmentation of plasma membrane proteins and lipids is slowly being uncovered.
  Annual review of plant biology 04/2013; 64.
• Source

  Available from: purdue.edu

  Article: Ionomics and the study of the plant ionome.

  David E Salt, Ivan Baxter, Brett Lahner
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  ABSTRACT: The ionome is defined as the mineral nutrient and trace element composition of an organism and represents the inorganic component of cellular and organismal systems. Ionomics, the study of the ionome, involves the quantitative and simultaneous measurement of the elemental composition of living organisms and changes in this composition in response to physiological stimuli, developmental state, and genetic modifications. Ionomics requires the application of high-throughput elemental analysis technologies and their integration with both bioinformatic and genetic tools. Ionomics has the ability to capture information about the functional state of an organism under different conditions, driven by genetic and developmental differences and by biotic and abiotic factors. The relatively high throughput and low cost of ionomic analysis means that it has the potential to provide a powerful approach to not only the functional analysis of the genes and gene networks that directly control the ionome, but also to the more extended gene networks that control developmental and physiological processes that affect the ionome indirectly. In this review we describe the analytical and bioinformatics aspects of ionomics, as well as its application as a functional genomics tool.
  Annual review of plant biology 02/2008; 59:709-33.
• Article: Structural and signaling networks for the polar cell growth machinery in pollen tubes.

  Alice Y Cheung, Hen-Ming Wu
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  ABSTRACT: Pollen tubes elongate within the pistil to transport sperms to the female gametophytes for fertilization. Pollen tubes grow at their tips through a rapid and polarized cell growth process. This tip growth process is supported by an elaborate and dynamic actin cytoskeleton and a highly active membrane trafficking system that together provide the driving force and secretory activities needed for growth. A polarized cytoplasm with an abundance of vesicles and tip-focused Ca(2+) and H(+) concentration gradients are important for the polar cell growth process. Apical membrane-located Rho GTPases regulate Ca(2+) concentration and actin dynamics in the cytoplasm and are crucial for maintaining pollen tube polarity. Pollen tube growth is marked by periods of rapid and slow growth phases. Activities that regulate and support this tip growth process also show oscillatory fluctuations. How these activities correlate with the rapid, polar, and oscillatory pollen tube growth process is discussed.
  Annual review of plant biology 02/2008; 59:547-72.
• Source

  Available from: ucr.ac.cr

  Article: Molecular aspects of seed dormancy.

  Ruth Finkelstein, Wendy Reeves, Tohru Ariizumi, Camille Steber
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  ABSTRACT: Seed dormancy provides a mechanism for plants to delay germination until conditions are optimal for survival of the next generation. Dormancy release is regulated by a combination of environmental and endogenous signals with both synergistic and competing effects. Molecular studies of dormancy have correlated changes in transcriptomes, proteomes, and hormone levels with dormancy states ranging from deep primary or secondary dormancy to varying degrees of release. The balance of abscisic acid (ABA):gibberellin (GA) levels and sensitivity is a major, but not the sole, regulator of dormancy status. ABA promotes dormancy induction and maintenance, whereas GA promotes progression from release through germination; environmental signals regulate this balance by modifying the expression of biosynthetic and catabolic enzymes. Mediators of environmental and hormonal response include both positive and negative regulators, many of which are feedback-regulated to enhance or attenuate the response. The net result is a slightly heterogeneous response, thereby providing more temporal options for successful germination.
  Annual review of plant biology 02/2008; 59:387-415.
• Source

  Available from: ntu.edu.tw

  Article: Gibberellin metabolism and its regulation.

  Shinjiro Yamaguchi
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  ABSTRACT: Bioactive gibberellins (GAs) are diterpene plant hormones that are biosynthesized through complex pathways and control diverse aspects of growth and development. Biochemical, genetic, and genomic approaches have led to the identification of the majority of the genes that encode GA biosynthesis and deactivation enzymes. Recent studies have highlighted the occurrence of previously unrecognized deactivation mechanisms. It is now clear that both GA biosynthesis and deactivation pathways are tightly regulated by developmental, hormonal, and environmental signals, consistent with the role of GAs as key growth regulators. In some cases, the molecular mechanisms for fine-tuning the hormone levels are beginning to be uncovered. In this review, I summarize our current understanding of the GA biosynthesis and deactivation pathways in plants and fungi, and discuss how GA concentrations in plant tissues are regulated during development and in response to environmental stimuli.
  Annual review of plant biology 02/2008; 59:225-51.
• Article: Plant immunity to insect herbivores.

  Gregg A Howe, Georg Jander
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  ABSTRACT: Herbivorous insects use diverse feeding strategies to obtain nutrients from their host plants. Rather than acting as passive victims in these interactions, plants respond to herbivory with the production of toxins and defensive proteins that target physiological processes in the insect. Herbivore-challenged plants also emit volatiles that attract insect predators and bolster resistance to future threats. This highly dynamic form of immunity is initiated by the recognition of insect oral secretions and signals from injured plant cells. These initial cues are transmitted within the plant by signal transduction pathways that include calcium ion fluxes, phosphorylation cascades, and, in particular, the jasmonate pathway, which plays a central and conserved role in promoting resistance to a broad spectrum of insects. A detailed understanding of plant immunity to arthropod herbivores will provide new insights into basic mechanisms of chemical communication and plant-animal coevolution and may also facilitate new approaches to crop protection and improvement.
  Annual review of plant biology 02/2008; 59:41-66.
• Source

  Available from: plantstress.com

  Article: Plant aquaporins: membrane channels with multiple integrated functions.

  Christophe Maurel, Lionel Verdoucq, Doan-Trung Luu, Véronique Santoni
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  ABSTRACT: Aquaporins are channel proteins present in the plasma and intracellular membranes of plant cells, where they facilitate the transport of water and/or small neutral solutes (urea, boric acid, silicic acid) or gases (ammonia, carbon dioxide). Recent progress was made in understanding the molecular bases of aquaporin transport selectivity and gating. The present review examines how a wide range of selectivity profiles and regulation properties allows aquaporins to be integrated in numerous functions, throughout plant development, and during adaptations to variable living conditions. Although they play a central role in water relations of roots, leaves, seeds, and flowers, aquaporins have also been linked to plant mineral nutrition and carbon and nitrogen fixation.
  Annual review of plant biology 02/2008; 59:595-624.
• Article: Algal sensory photoreceptors.

  Peter Hegemann
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  ABSTRACT: Only five major types of sensory photoreceptors (BLUF-proteins, cryptochromes, phototropins, phytochromes, and rhodopsins) are used in nature to regulate developmental processes, photosynthesis, photoorientation, and control of the circadian clock. Sensory photoreceptors of algae and protists are exceptionally rich in structure and function; light-gated ion channels and photoactivated adenylate cyclases are unique examples. During the past ten years major progress has been made with respect to understanding the function, photochemistry, and structure of key sensory players of the algal kingdom.
  Annual review of plant biology 02/2008; 59:167-89.
• Article: Auxin: the looping star in plant development.

  René Benjamins, Ben Scheres
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  ABSTRACT: The phytohormone auxin is a key factor in plant growth and development. Forward and reverse genetic strategies have identified important molecular components in auxin perception, signaling, and transport. These advances resulted in the identification of some of the underlying regulatory mechanisms as well as the emergence of functional frameworks for auxin action. This review focuses on the feedback loops that form an integrative part of these regulatory mechanisms.
  Annual review of plant biology 02/2008; 59:443-65.
• Article: Chlorophyll fluorescence: a probe of photosynthesis in vivo.

  Neil R Baker
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  ABSTRACT: The use of chlorophyll fluorescence to monitor photosynthetic performance in algae and plants is now widespread. This review examines how fluorescence parameters can be used to evaluate changes in photosystem II (PSII) photochemistry, linear electron flux, and CO(2) assimilation in vivo, and outlines the theoretical bases for the use of specific fluorescence parameters. Although fluorescence parameters can be measured easily, many potential problems may arise when they are applied to predict changes in photosynthetic performance. In particular, consideration is given to problems associated with accurate estimation of the PSII operating efficiency measured by fluorescence and its relationship with the rates of linear electron flux and CO(2) assimilation. The roles of photochemical and nonphotochemical quenching in the determination of changes in PSII operating efficiency are examined. Finally, applications of fluorescence imaging to studies of photosynthetic heterogeneity and the rapid screening of large numbers of plants for perturbations in photosynthesis and associated metabolism are considered.
  Annual review of plant biology 02/2008; 59:89-113.
• Source

  Available from: ubc.ca

  Article: Sealing plant surfaces: cuticular wax formation by epidermal cells.

  Lacey Samuels, Ljerka Kunst, Reinhard Jetter
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  ABSTRACT: The vital importance of plant surface wax in protecting tissue from environmental stresses is reflected in the huge commitment of epidermal cells to cuticle formation. During cuticle deposition, a massive flux of lipids occurs from the sites of lipid synthesis in the plastid and the endoplasmic reticulum to the plant surface. Recent genetic studies in Arabidopsis have improved our understanding of fatty acid elongation and of the subsequent modification of the elongated products into primary alcohols, wax esters, secondary alcohols, and ketones, shedding light on the enzymes involved in these pathways. In contrast, the biosynthesis of alkanes is still poorly understood, as are the mechanisms of wax transport from the site of biosynthesis to the cuticle. Currently, nothing is known about wax trafficking from the endoplasmic reticulum to the plasma membrane, or about translocation through the cell wall to the cuticle. However, a first breakthrough toward an understanding of wax export recently came with the discovery of ATP binding cassette (ABC) transporters that are involved in releasing wax from the plasma membrane into the apoplast. An overview of our present knowledge of wax biosynthesis and transport and the regulation of these processes during cuticle assembly is presented, including the evidence for coordination of cutin polyester and wax production.
  Annual review of plant biology 02/2008; 59:683-707.
• Source

  Available from: ntu.edu.tw

  Article: Molecular basis of plant architecture.

  Yonghong Wang, Jiayang Li
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  ABSTRACT: Higher plants display a variety of architectures that are defined by the degree of branching, internodal elongation, and shoot determinancy. Studies on the model plants of Arabidopsis thaliana and tomato and on crop plants such as rice and maize have greatly strengthened our understanding on the molecular genetic bases of plant architecture, one of the hottest areas in plant developmental biology. The identification of mutants that are defective in plant architecture and characterization of the corresponding and related genes will eventually enable us to elucidate the molecular mechanisms underlying plant architecture. The achievements made so far in studying plant architecture have already allowed us to pave a way for optimizing the plant architecture of crops by molecular design and improving grain productivity.
  Annual review of plant biology 02/2008; 59:253-79.
• Article: Plant proteases: from phenotypes to molecular mechanisms.

  Renier A L van der Hoorn
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  ABSTRACT: Plant genomes encode hundreds of proteases, which represent dozens of unrelated families. The biological role of these proteases is mostly unknown, but mutant alleles, gene silencing, and overexpression studies have provided phenotypes for a growing number of proteases. The aim of this review is to show the diversity of the processes that are regulated by proteases, and to summarize the current knowledge of the underlying molecular mechanisms. The emerging picture is that plant proteases are key regulators of a striking variety of biological processes, including meiosis, gametophyte survival, embryogenesis, seed coat formation, cuticle deposition, epidermal cell fate, stomata development, chloroplast biogenesis, and local and systemic defense responses. The functional diversity correlates with the molecular data: Proteases are specifically expressed in time and space and accumulate in different subcellular compartments. Their substrates and activation mechanisms are elusive, however, and represent a challenging topic for further research.
  Annual review of plant biology 02/2008; 59:191-223.
• Article: Decoding of light signals by plant phytochromes and their interacting proteins.

  Gabyong Bae, Giltsu Choi
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  ABSTRACT: Phytochromes are red/far-red light photoreceptors that convert the information contained in external light into biological signals. The decoding process starts with the perception of red light, which occurs through photoisomerization of a chromophore located within the phytochrome, leading to structural changes that include the disruption of intramolecular interactions between the N- and C-terminal domains of the phytochrome. This disruption exposes surfaces required for interactions with other proteins. In contrast, the perception of far-red light reverses the photoisomerization, restores the intramolecular interaction, and closes the interacting surfaces. Light information represented by the concentration of opened interacting surfaces is converted into biological signals through the modulating activity of interacting proteins. This review summarizes plant phytochromes, phytochrome-interacting proteins, and signal transmission from phytochromes to their interacting proteins.
  Annual review of plant biology 02/2008; 59:281-311.
• Article: Our work with cyanogenic plants.

  Eric E Conn
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  ABSTRACT: The author identifies three individuals who played major roles in the development of his scientific career: his chemistry professor at the University of Colorado, Reuben Gustavson; his Ph.D. supervisor at the University of Chicago, Birgit Vennesland; and his friend and departmental colleague of 55 years at the University of California, Paul Stumpf. He also mentions students, postdoctoral scholars, and professional colleagues he encountered during his career of nearly 50 years as a plant biochemist. Finally, the article describes the author's research on cyanogenic plants. These plants contain hydrogen cyanide in a bound form that is usually released when the plant tissue is macerated. Cyanogenic plants contain cyanogenic glycosides in which the hydroxyl groups of cyanohydrins (alpha-hydroxynitriles) of aldehydes or ketones are covalently linked to a sugar, usually D-glucose. The biosynthesis, localization, and degradation, by hydrolysis, of these compounds have been examined, especially in sorghum and flax seedlings.
  Annual review of plant biology 02/2008; 59:1-19.